Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_E24
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po... 72 7e-14
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 28 1.2
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 28 1.2
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 1.6
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 2.8
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa... 27 2.8
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 26 4.9
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 26 4.9
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 8.5
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 8.5
>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 171
Score = 71.7 bits (168), Expect = 7e-14
Identities = 35/91 (38%), Positives = 53/91 (58%)
Frame = +2
Query: 116 YDYVKKATKDKNVLLIDVREPDELKEHGIIPNSVNIPLGSVTSVLSSMTEKEFQQIFNRK 295
Y+ K+ T DK+ +LIDVREPDE K+ G I S N+P+G + + ++++EF + +
Sbjct: 64 YNLSKRPTGDKSTVLIDVREPDEFKQ-GAIETSYNLPVGKIEEAM-KLSDEEFSKTYGFS 121
Query: 296 KPNPNTEIIFYCMIGKRSGKAQQNAIDLGYK 388
KP ++ YC G+RS A LGYK
Sbjct: 122 KPVFEDNVVVYCRSGRRSTTASDILTKLGYK 152
Score = 28.3 bits (60), Expect = 0.91
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 417 NYLGSWTDWNNKVK 458
NY GSW +W++K+K
Sbjct: 156 NYTGSWLEWSDKIK 169
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 128 KKATKD-KNVLLIDVREPDELKEHGIIPNSVNIPLGSVTSVLSSMTE 265
+K KD +N +L +L+EH I VNIPL + + S +T+
Sbjct: 733 EKFVKDWRNAMLCFTVRDFKLREHDSILGVVNIPLATTLTTSSQLTK 779
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 50 VPNVESRRFYAQEAKPAPMIADYDYVKKATKDKNVLLIDVREPDELKEHGIIPNSVNIPL 229
+P+++ R Y ++ K AD + + A LLIDV PD++ E I+ IP+
Sbjct: 510 IPDLQKRIEYLEQQKRK---ADAEAIANAQPGSEPLLIDVVGPDQINE--IVARWTGIPV 564
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -1
Query: 273 NSFSVMELKTDVTLPNGILTLFGIIPCSFSSSGSLT 166
N S EL GI FG + C+F SS SLT
Sbjct: 931 NGKSSSELNPSPYFYLGIYLFFGFLSCAFISSSSLT 966
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 225 GILTLFGIIPCSFSSSGSLT 166
GI TLFG++ C+ S SLT
Sbjct: 945 GIYTLFGLLSCALISLSSLT 964
>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 130 LNIVIICNHGCRFRLLRV-KSSRLHIWNVSN 41
L I + C+H CR+R L +L W +SN
Sbjct: 287 LVIALCCHHHCRWRTLSTFAREQLSHWGISN 317
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 25.8 bits (54), Expect = 4.9
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Frame = +2
Query: 38 TITYVPNVESRRFYAQEAKPAPMIADYDYVKKATKDKNVLLIDVREP-DELKEH---GII 205
TI N+ES A+ P+I+ VK KD ++ ++ EP + +KE G +
Sbjct: 554 TINATVNIESDLDAAKPGIENPIISPLLPVKDDEKDLDLRELNPLEPFENMKEQADDGTV 613
Query: 206 PNSVNIPLGSVTSV--LSSMTEKE 271
N +N+ SV LSS K+
Sbjct: 614 TNPLNVSSDKAMSVYLLSSENAKD 637
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 217 NTVWNYPMFLQLIWFSYVDKKNIFVFSRFLNIVIICNHG 101
N V YP F ++ F +++VF+R I+ I N G
Sbjct: 382 NLVETYPEFTYVLSFQLYIDDSVYVFTRPGVIIAISNEG 420
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 357 PNKMQLISVIRNNSYLFSTKNYLGSWTDWNNKVK*EFEL 473
P+K I V N + F TK+ G WN ++ ++ L
Sbjct: 1342 PHKTIKIIVTDNQDHSFKTKSRKGPSPSWNEEIPVKWSL 1380
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 219 LTLFGIIPCSFSSSGSLTSIRRTFL 145
L+LFGI SFS G L S+ T +
Sbjct: 65 LSLFGIFSISFSVLGMLPSVASTLV 89
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,370
Number of Sequences: 5004
Number of extensions: 52309
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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