Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E24
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0308 + 24286923-24286927,24288430-24288907,24288980-242890...    31   0.93 
02_02_0528 + 11199799-11200470,11201850-11201951,11202858-112034...    29   2.1  
12_02_0437 - 19084990-19087695                                         27   8.7  
04_04_1344 + 32787574-32787632,32788488-32789070,32789211-327894...    27   8.7  
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225...    27   8.7  
02_01_0524 + 3798019-3798265,3798419-3798651,3798765-3799014,379...    27   8.7  

>04_04_0308 +
           24286923-24286927,24288430-24288907,24288980-24289099,
           24289182-24289235,24289467-24289579,24289799-24290011,
           24290123-24290201,24290323-24290376,24290448-24290522,
           24291029-24291193,24291843-24291941,24292186-24292241,
           24292331-24292433,24293289-24293417,24293657-24293835,
           24293953-24293977,24294060-24294175,24294252-24294342
          Length = 717

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 419 IFCTEKIRIISYNRDQLHFVGLFQIFFLSYSKKLFQ 312
           +FC+ KIR+ SYN  +  F+G   +   + SK L+Q
Sbjct: 389 LFCSNKIRVFSYNFTEQPFLGSDGVDGYAMSKFLYQ 424


>02_02_0528 +
           11199799-11200470,11201850-11201951,11202858-11203487,
           11204287-11204547
          Length = 554

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 94  FRLLRVKSSRLHIWNVSNCNIR 29
           F L+ + S  +H+WN+ NC IR
Sbjct: 413 FLLVNLISEAIHLWNIRNCPIR 434


>12_02_0437 - 19084990-19087695
          Length = 901

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 172 SYVDKKNIFVFSRFLNIVIICNHGCRFRLLRV 77
           S+   ++  +F + ++I  ICN    FRLLRV
Sbjct: 555 SWQQLRSFLLFDKHVSISWICNASSNFRLLRV 586


>04_04_1344 +
           32787574-32787632,32788488-32789070,32789211-32789423,
           32789884-32790173,32791201-32791312,32791394-32791630,
           32791714-32792394
          Length = 724

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 390 NNSYLFSTKNYLGSWTDWNNK 452
           N SYL+ + N+ G++T W +K
Sbjct: 314 NKSYLYCSDNHTGNYTSWLSK 334


>02_04_0194 +
           20820985-20821027,20822168-20822367,20822477-20822566,
           20822820-20822825,20822866-20823009,20823089-20823580
          Length = 324

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 248 LSSMTEKEFQQIFNRKKPNPNTEIIFYC 331
           LS++  ++ +Q     KP P TE++F C
Sbjct: 18  LSALKSRDKEQEAELAKPEPTTEVLFLC 45


>02_01_0524 +
           3798019-3798265,3798419-3798651,3798765-3799014,
           3799104-3799249,3799372-3799577,3799721-3799845,
           3800154-3800734
          Length = 595

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 182 ELKEHGIIPNSV--NIPLGSVTSVLSSMTEKEFQQIFNRKKPNPNTEIIFYCMIGKRSGK 355
           E++EHGI PN+   N  L  +     +    E  Q   R++   NTE  F  MI    GK
Sbjct: 235 EMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTE-TFTLMINV-YGK 292

Query: 356 AQQ 364
           A+Q
Sbjct: 293 AKQ 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,515,541
Number of Sequences: 37544
Number of extensions: 280347
Number of successful extensions: 742
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)