Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_E24
(603 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-3451|AAF56229.2| 148|Drosophila melanogaster CG6000-PA... 113 2e-25
AY070705-1|AAL48176.1| 110|Drosophila melanogaster RH54517p pro... 68 9e-12
AE014297-1577|AAF54857.2| 110|Drosophila melanogaster CG12279-P... 68 9e-12
X07311-1|CAA30276.1| 111|Drosophila melanogaster heat shock pro... 65 6e-11
AE014296-1626|AAF50291.1| 111|Drosophila melanogaster CG4456-PB... 65 6e-11
AE014296-1625|AAN11961.1| 111|Drosophila melanogaster CG4456-PA... 65 6e-11
AY075582-1|AAL68387.1| 841|Drosophila melanogaster SD08161p pro... 31 1.2
AJ312282-1|CAC41644.1| 841|Drosophila melanogaster nuclear RNA ... 31 1.2
AE014296-2758|AAF49447.3| 841|Drosophila melanogaster CG4118-PB... 31 1.2
AE014296-2757|AAF49448.3| 841|Drosophila melanogaster CG4118-PA... 31 1.2
AE014297-1896|AAF55096.2| 1010|Drosophila melanogaster CG7362-PA... 28 8.5
>AE014297-3451|AAF56229.2| 148|Drosophila melanogaster CG6000-PA,
isoform A protein.
Length = 148
Score = 113 bits (272), Expect = 2e-25
Identities = 67/140 (47%), Positives = 88/140 (62%), Gaps = 3/140 (2%)
Frame = +2
Query: 17 RVSVSNITITYVPNVES---RRFYAQEAKPAPMIADYDYVKKATKDKNVLLIDVREPDEL 187
RV+ S I + N +S +RFY+Q P I DYD VKK + LLIDVREP+EL
Sbjct: 5 RVARSQIPFSTARNTQSNLLQRFYSQA--PQIGIVDYDVVKKLPSEPQKLLIDVREPEEL 62
Query: 188 KEHGIIPNSVNIPLGSVTSVLSSMTEKEFQQIFNRKKPNPNTEIIFYCMIGKRSGKAQQN 367
KE G IP S+NIPLG V+ L++ +E+ F+ + R+KP P TEIIF+C IGKRS KA +
Sbjct: 63 KETGQIPASINIPLGVVSQELAA-SEQLFKSKYGREKPKPETEIIFHCKIGKRSLKAAEA 121
Query: 368 AIDLGYKK*FLSFQYKKLPW 427
A LG+K ++Q L W
Sbjct: 122 AAALGFKN-VKNYQGSWLDW 140
>AY070705-1|AAL48176.1| 110|Drosophila melanogaster RH54517p
protein.
Length = 110
Score = 68.1 bits (159), Expect = 9e-12
Identities = 35/93 (37%), Positives = 51/93 (54%)
Frame = +2
Query: 107 IADYDYVKKATKDKNVLLIDVREPDELKEHGIIPNSVNIPLGSVTSVLSSMTEKEFQQIF 286
+A Y+ VK L DVR ELKE G++P S+NIPL + L ++ E++F Q +
Sbjct: 1 MATYEEVKDIPNHPEKYLFDVRNESELKETGVLPASINIPLSELEKAL-NLPEEDFAQTY 59
Query: 287 NRKKPNPNTEIIFYCMIGKRSGKAQQNAIDLGY 385
R KP + +IF C G R+ +A A LG+
Sbjct: 60 GRVKPAVDAVLIFSCKAGGRAARAANLASTLGF 92
>AE014297-1577|AAF54857.2| 110|Drosophila melanogaster CG12279-PA
protein.
Length = 110
Score = 68.1 bits (159), Expect = 9e-12
Identities = 35/93 (37%), Positives = 51/93 (54%)
Frame = +2
Query: 107 IADYDYVKKATKDKNVLLIDVREPDELKEHGIIPNSVNIPLGSVTSVLSSMTEKEFQQIF 286
+A Y+ VK L DVR ELKE G++P S+NIPL + L ++ E++F Q +
Sbjct: 1 MATYEEVKDIPNHPEKYLFDVRNESELKETGVLPASINIPLSELEKAL-NLPEEDFAQTY 59
Query: 287 NRKKPNPNTEIIFYCMIGKRSGKAQQNAIDLGY 385
R KP + +IF C G R+ +A A LG+
Sbjct: 60 GRVKPAVDAVLIFSCKAGGRAARAANLASTLGF 92
>X07311-1|CAA30276.1| 111|Drosophila melanogaster heat shock
protein protein.
Length = 111
Score = 65.3 bits (152), Expect = 6e-11
Identities = 35/93 (37%), Positives = 51/93 (54%)
Frame = +2
Query: 107 IADYDYVKKATKDKNVLLIDVREPDELKEHGIIPNSVNIPLGSVTSVLSSMTEKEFQQIF 286
+A Y+ VK +V LIDVR +EL++ G IP S+NIPL + L ++ F+ +
Sbjct: 1 MATYEQVKDVPNHPDVYLIDVRRKEELQQTGFIPASINIPLDELDKAL-NLDGSAFKNKY 59
Query: 287 NRKKPNPNTEIIFYCMIGKRSGKAQQNAIDLGY 385
R KP + IIF C G R +A++ A GY
Sbjct: 60 GRSKPEKQSPIIFTCRSGNRVLEAEKIAKSQGY 92
>AE014296-1626|AAF50291.1| 111|Drosophila melanogaster CG4456-PB,
isoform B protein.
Length = 111
Score = 65.3 bits (152), Expect = 6e-11
Identities = 35/93 (37%), Positives = 51/93 (54%)
Frame = +2
Query: 107 IADYDYVKKATKDKNVLLIDVREPDELKEHGIIPNSVNIPLGSVTSVLSSMTEKEFQQIF 286
+A Y+ VK +V LIDVR +EL++ G IP S+NIPL + L ++ F+ +
Sbjct: 1 MATYEQVKDVPNHPDVYLIDVRRKEELQQTGFIPASINIPLDELDKAL-NLDGSAFKNKY 59
Query: 287 NRKKPNPNTEIIFYCMIGKRSGKAQQNAIDLGY 385
R KP + IIF C G R +A++ A GY
Sbjct: 60 GRSKPEKQSPIIFTCRSGNRVLEAEKIAKSQGY 92
>AE014296-1625|AAN11961.1| 111|Drosophila melanogaster CG4456-PA,
isoform A protein.
Length = 111
Score = 65.3 bits (152), Expect = 6e-11
Identities = 35/93 (37%), Positives = 51/93 (54%)
Frame = +2
Query: 107 IADYDYVKKATKDKNVLLIDVREPDELKEHGIIPNSVNIPLGSVTSVLSSMTEKEFQQIF 286
+A Y+ VK +V LIDVR +EL++ G IP S+NIPL + L ++ F+ +
Sbjct: 1 MATYEQVKDVPNHPDVYLIDVRRKEELQQTGFIPASINIPLDELDKAL-NLDGSAFKNKY 59
Query: 287 NRKKPNPNTEIIFYCMIGKRSGKAQQNAIDLGY 385
R KP + IIF C G R +A++ A GY
Sbjct: 60 GRSKPEKQSPIIFTCRSGNRVLEAEKIAKSQGY 92
>AY075582-1|AAL68387.1| 841|Drosophila melanogaster SD08161p
protein.
Length = 841
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -3
Query: 103 GCRFRLLRVKSSRLHIWNVSNCNIRNANSKHF 8
G R R L++ + RLHI N S IRNA S +F
Sbjct: 743 GKRARRLKIANERLHITNPSKTAIRNAFSVNF 774
>AJ312282-1|CAC41644.1| 841|Drosophila melanogaster nuclear RNA
export factor 2 (NXF2) protein.
Length = 841
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -3
Query: 103 GCRFRLLRVKSSRLHIWNVSNCNIRNANSKHF 8
G R R L++ + RLHI N S IRNA S +F
Sbjct: 743 GKRARRLKIANERLHITNPSKTAIRNAFSVNF 774
>AE014296-2758|AAF49447.3| 841|Drosophila melanogaster CG4118-PB,
isoform B protein.
Length = 841
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -3
Query: 103 GCRFRLLRVKSSRLHIWNVSNCNIRNANSKHF 8
G R R L++ + RLHI N S IRNA S +F
Sbjct: 743 GKRARRLKIANERLHITNPSKTAIRNAFSVNF 774
>AE014296-2757|AAF49448.3| 841|Drosophila melanogaster CG4118-PA,
isoform A protein.
Length = 841
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = -3
Query: 103 GCRFRLLRVKSSRLHIWNVSNCNIRNANSKHF 8
G R R L++ + RLHI N S IRNA S +F
Sbjct: 743 GKRARRLKIANERLHITNPSKTAIRNAFSVNF 774
>AE014297-1896|AAF55096.2| 1010|Drosophila melanogaster CG7362-PA
protein.
Length = 1010
Score = 28.3 bits (60), Expect = 8.5
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Frame = +2
Query: 110 ADYDYVKKATKDKNVLLIDVREPDE------LKEHGIIPNSVNIPLGSVTSVLSS-MTEK 268
A+ + KKA KN L +E D+ LK+ G N + S TS + + +K
Sbjct: 794 AEAEMKKKAELKKNNSLSHKKEDDKAPNCNKLKKQGPKKNKCRVVKISRTSEKDNYIPKK 853
Query: 269 EFQQIFNRKKPNPNTEI 319
E+ +IFN +K P T +
Sbjct: 854 EYPRIFNIEKAQPKTVV 870
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,143,438
Number of Sequences: 53049
Number of extensions: 503134
Number of successful extensions: 1353
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2462276481
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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