Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E24
         (603 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         26   0.25 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    26   0.25 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    26   0.25 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   0.76 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   1.00 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   3.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.3  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 410 TEKIRIISYNRDQLHFVGLFQIFFLSYSKKLFQC*DLVFFG 288
           TE+ R   Y ++ +H+ G+  I     S K+     ++FFG
Sbjct: 280 TEQFRTSDYQQNDIHYEGVQNILDTQSSAKVVSKSGVLFFG 320


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 410 TEKIRIISYNRDQLHFVGLFQIFFLSYSKKLFQC*DLVFFG 288
           TE+ R   Y ++ +H+ G+  I     S K+     ++FFG
Sbjct: 280 TEQFRTSDYQQNDIHYEGVQNILDTQSSAKVVSKSGVLFFG 320


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 410 TEKIRIISYNRDQLHFVGLFQIFFLSYSKKLFQC*DLVFFG 288
           TE+ R   Y ++ +H+ G+  I     S K+     ++FFG
Sbjct: 280 TEQFRTSDYQQNDIHYEGVQNILDTQSSAKVVSKSGVLFFG 320


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 351 EKPNKMQLISVIRNNSYLFSTKNYLGSWTDWNNKV 455
           E+  + ++IS + NN Y ++  NY  ++ ++N K+
Sbjct: 307 ERSKERKIISSLSNN-YNYNNNNYKYNYNNYNKKL 340


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 351 EKPNKMQLISVIRNNSYLFSTKNYLGSWTDWNNKVK*EFELYNKGNKKCYLLFCLIE 521
           E+  + ++IS + NN    +  NY  ++ ++NN        YN   KK Y     IE
Sbjct: 307 ERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNN----YNNNYNNNYKKLYYNINYIE 359


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 381 VIRNNSYLFSTKNYLGSWTDWNN 449
           +I NN+ L +  NY  ++ ++NN
Sbjct: 81  IISNNNSLSNNYNYNNNYNNYNN 103


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 369 AFCWAFPDLFPIIQ*KIISVLGFGFFRL 286
           +FC AFP  F + +   +  LG GF R+
Sbjct: 290 SFCKAFPWHFVVDRQLELVQLGVGFMRI 317


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +3

Query: 12  CLELAFLILQLLTFQMWSLDDFTRRRRNLHP 104
           C EL   ++Q ++  ++ LD+   R  +  P
Sbjct: 135 CKELGISVVQKVSHTLYKLDEIIERNGDKPP 165


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 184 LIWFSYVDKKNIFVFSRFLNIVIIC 110
           L+  SYVD   +  F+  + ++++C
Sbjct: 806 LVCNSYVDASYMIAFAYPIMLIVVC 830


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,119
Number of Sequences: 438
Number of extensions: 4264
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)