Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E23
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    29   0.23 
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       29   0.23 
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    27   1.6  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   2.8  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      24   8.5  

>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 175 TDFKTKIRFLIDTGSDLCVYPLKFVINKRLQRTNYELFAANGSV 306
           TDF  K+ FL   G +L +   K +  K  +   YELF++  S+
Sbjct: 124 TDFPLKLFFLSTVGIELLIVNEKIIPQKTQKYLLYELFSSPSSI 167


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 140 LADITDCPARFPCSYKVNG 84
           L D+T+ P RF  +YKVNG
Sbjct: 501 LLDVTELPVRFKLTYKVNG 519


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 92  PCSYKGNAPGSR*CRPKTTASLVAACLLQTLKLKFDF 202
           P  YKGNA G   C P TT   V   + Q++ L  +F
Sbjct: 875 PKVYKGNALGHTICAPFTTLKDVLKEVPQSVGLNVEF 911


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 423 RKKVYADNRLNNVSYHKTPIKSTTQSKVQ 337
           +KK+ A NRL+N+ Y+   ++   + +VQ
Sbjct: 353 KKKLDAINRLSNIIYYSERVRCEIEDQVQ 381


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 233 YTHKSEPVSIKNRILVLKSVINKRPLE 153
           Y   SEP  + N +L+  S++++RPL+
Sbjct: 100 YIEFSEPSLVPNALLLNGSMLHERPLK 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,799
Number of Sequences: 5004
Number of extensions: 31967
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)