Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E23
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390     29   1.2  
03_05_0269 - 22545925-22546554,22546663-22547010,22547447-22547797     29   2.0  
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995...    27   4.7  
04_04_0308 + 24286923-24286927,24288430-24288907,24288980-242890...    27   8.2  

>05_03_0260 - 11200887-11200907,11200979-11201961,11212201-11212390
          Length = 397

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 127 VMSAKNDCL-SSGRLFITDFKTKIRFLIDTGSDLCVYPLKFVINKRLQRTNYELFAANGS 303
           ++  KN  L  + R  + ++KT   F ++  S  C    +  ++K L++T+YEL +    
Sbjct: 123 IVERKNRTLIEAARAMLDEYKTSDVFWVEAVSTACHAINRLYLHKILKKTSYELLSGKKP 182

Query: 304 VISTY 318
            +S +
Sbjct: 183 NVSYF 187


>03_05_0269 - 22545925-22546554,22546663-22547010,22547447-22547797
          Length = 442

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = +1

Query: 37  SILLVPLEVS*SSYQVPFTL*LQGKRAGQSVMSAKNDCLSSG--RLFITDFKTKIRFLID 210
           SI   P+E S + Y +   L   G   GQ ++++  +  + G  R+  T+F+T  R + +
Sbjct: 111 SIKDTPIETSSAQYILQQYLAASG---GQKLLASVRNAYTMGKVRMVATEFETAGRLVKN 167

Query: 211 TGSDLCVYPLKFVINKRLQRTNYELFAANGSVI 309
             +  C  P +FV+ +      Y   A  GS +
Sbjct: 168 RNAARCAEPGRFVLWQMAPEMWYIELAVGGSKV 200


>04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,
            9951287-9951415,9951782-9952012,9952655-9952732,
            9953035-9953055,9953790-9953855,9953935-9954015,
            9954148-9954920,9955461-9955654,9956723-9956817,
            9958190-9958219,9958334-9958453,9959185-9959262,
            9959428-9959505,9960459-9960488,9960614-9960739,
            9961239-9961379,9963416-9963532,9963619-9963670,
            9963759-9963890,9964668-9964720,9964816-9964911,
            9965255-9965260,9965416-9965561,9966494-9966629,
            9966885-9967038,9968017-9968154,9968268-9968614
          Length = 1295

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 408  ADNRLNNVSYHKTPIKSTTQSKVQ*QINPTVSTYN 304
            +D+RL N+ +H+  I  T++  +     P ++T+N
Sbjct: 950  SDSRLRNLRFHRVSIDITSREDIPTLGRPRITTFN 984


>04_04_0308 +
           24286923-24286927,24288430-24288907,24288980-24289099,
           24289182-24289235,24289467-24289579,24289799-24290011,
           24290123-24290201,24290323-24290376,24290448-24290522,
           24291029-24291193,24291843-24291941,24292186-24292241,
           24292331-24292433,24293289-24293417,24293657-24293835,
           24293953-24293977,24294060-24294175,24294252-24294342
          Length = 717

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = -3

Query: 233 YTHKSEPVSIKNRILVLKSVINKRPLERQSFLADI 129
           Y HK+ P  + ++ ++++SV+N+  ++   ++ DI
Sbjct: 482 YFHKTSPQLLADKDILIRSVLNRSEMKDGHYVFDI 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,258,025
Number of Sequences: 37544
Number of extensions: 186629
Number of successful extensions: 368
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)