Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E23
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82263-4|CAB62794.1|  316|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AL033508-4|CAE45091.1|  430|Caenorhabditis elegans Hypothetical ...    27   4.2  
AC024135-1|AAY86224.1|  300|Caenorhabditis elegans Hypothetical ...    27   4.2  
AF077546-4|AAC26317.2|  704|Caenorhabditis elegans Hypothetical ...    27   5.5  
AC024798-6|AAK29913.1|  356|Caenorhabditis elegans Hypothetical ...    27   5.5  
AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome as...    27   7.3  
AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog...    27   7.3  
AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.       27   7.3  
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    26   9.7  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U39993-2|AAK72059.1|  744|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>Z82263-4|CAB62794.1|  316|Caenorhabditis elegans Hypothetical
           protein C47A4.3 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +1

Query: 166 LFITDFKTKIRFLIDTGSDLCVYPLKFVINKRLQRTNYELFAANGSVISTYGW 324
           LF+ D+  + RF I+T   L  Y +KF  N  L R N+E    N     TYG+
Sbjct: 85  LFLGDYVDRGRFSIETIVLLLAYKVKFPCNFFLLRGNHECEFVN----KTYGF 133


>AL033508-4|CAE45091.1|  430|Caenorhabditis elegans Hypothetical
           protein Y106G6G.6 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 233 YTHKSEPVSIKNRILVLKSVINKRPLERQSFL 138
           + H + PVS+ +RI  + S ++ RPL  Q F+
Sbjct: 81  HIHLTAPVSLLSRISDIISTLSHRPLVHQMFI 112


>AC024135-1|AAY86224.1|  300|Caenorhabditis elegans Hypothetical
           protein C25A6.1 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 166 LFITDFKTKIRFLIDTGSDLCVYPLKFVINKRLQRTNYE 282
           LF+ D+  + RF I+T   L  Y +KF  N  L R N+E
Sbjct: 85  LFLGDYVDRGRFSIETIVLLLAYKVKFPGNLFLLRGNHE 123


>AF077546-4|AAC26317.2|  704|Caenorhabditis elegans Hypothetical
           protein T08E11.4 protein.
          Length = 704

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 349 VQSPMTN*SNRKYL*LSHWLQKVHNLFAEGVY 254
           + SP T   N+K   L+H +Q V N+   G+Y
Sbjct: 534 LDSPCTETMNQKTFMLNHTVQNVSNIKERGIY 565


>AC024798-6|AAK29913.1|  356|Caenorhabditis elegans Hypothetical
           protein Y48G9A.11 protein.
          Length = 356

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -3

Query: 182 KSVINKRPLERQSFLADITDCPARFPCSYKVNGT**LDHETSSGTNKIDAFLSMMFEN 9
           K+V ++    +  FL  ITDC AR  C Y+       +H  +   N+  A+ +M F N
Sbjct: 119 KTVKSEISTRQPGFLCPITDCTAR--CDYQATLN---EHVRAQHENEQVAYETMQFAN 171


>AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome
           assembly factor protein6 protein.
          Length = 720

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 420 KKVYADNRLNNVSYHKTPIKSTTQSKVQ*QINPTVS 313
           K V  DN   N  +H+TPI  +  +K+     P+V+
Sbjct: 117 KNVAVDNITPNFKFHETPIPISEDAKLSLMRQPSVA 152


>AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog
           protein.
          Length = 720

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 420 KKVYADNRLNNVSYHKTPIKSTTQSKVQ*QINPTVS 313
           K V  DN   N  +H+TPI  +  +K+     P+V+
Sbjct: 117 KNVAVDNITPNFKFHETPIPISEDAKLSLMRQPSVA 152


>AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.
          Length = 720

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 420 KKVYADNRLNNVSYHKTPIKSTTQSKVQ*QINPTVS 313
           K V  DN   N  +H+TPI  +  +K+     P+V+
Sbjct: 117 KNVAVDNITPNFKFHETPIPISEDAKLSLMRQPSVA 152


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 145  DCLSSGRLFI-TDFKTKIRFLIDTGSDLCVYPLKFVINKRLQRTNYELFAAN 297
            DC S+   ++  D  T+   L  TG+DL    + F   ++ Q ++YEL A N
Sbjct: 1059 DCTSATSYYMPVDGWTQSLTLAVTGTDLYSVEVTFPDGQKGQNSDYELVAIN 1110


>Z92813-7|CAB07283.2|  758|Caenorhabditis elegans Hypothetical
           protein T28A8.7 protein.
          Length = 758

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
 Frame = +1

Query: 139 KNDCLSSGRLFITDFKTKIRFLIDTGSDLCVYPLKFVINKRL---QRTNYELFAANGSVI 309
           K D L +GRL IT+  + + + +     L       V+N      Q T   +  A G + 
Sbjct: 632 KLDQLENGRLHITEIPSLVHYFVPQLEKLPFLIATLVLNVDYDDEQNTFRTICRAIGDLF 691

Query: 310 S-TYGWINLSLDFGLRRAFNWRFVIADVVKPIIGIDFL 420
           +    +I L        A  W+ +I +V+ P++   F+
Sbjct: 692 TLDTNFITLDKKISAFSATPWKTLIKEVLMPLVKRKFI 729


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 145  DCLSSGRLFI-TDFKTKIRFLIDTGSDLCVYPLKFVINKRLQRTNYELFAAN 297
            DC S+   ++  D  T+   L  TG+DL    + F   ++ Q ++YEL A N
Sbjct: 1059 DCTSATSYYMPVDGWTQSLTLAVTGTDLYSVEVTFPDGQKGQNSDYELVAIN 1110


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 145  DCLSSGRLFI-TDFKTKIRFLIDTGSDLCVYPLKFVINKRLQRTNYELFAAN 297
            DC S+   ++  D  T+   L  TG+DL    + F   ++ Q ++YEL A N
Sbjct: 1059 DCTSATSYYMPVDGWTQSLTLAVTGTDLYSVEVTFPDGQKGQNSDYELVAIN 1110


>U39993-2|AAK72059.1|  744|Caenorhabditis elegans Hypothetical
           protein F47E1.2 protein.
          Length = 744

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 100 LQGKRAGQSVM--SAKNDCLSSGRLFI 174
           L G+RA   VM  S  N CL SG++FI
Sbjct: 482 LNGRRAAMFVMLMSTLNVCLYSGKIFI 508


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,258,309
Number of Sequences: 27780
Number of extensions: 177030
Number of successful extensions: 363
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)