Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E21
         (184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    23   7.0  
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    22   9.3  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    22   9.3  
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    22   9.3  
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    22   9.3  

>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 104 VFYYIIYLLNVSFDKLITSKG 42
           V +Y IYL  V   K + +KG
Sbjct: 371 VAFYFIYLRKVMIPKFVENKG 391


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 56  ITSKGIILMKIDILEEP 6
           +T K +I  ++D+L+EP
Sbjct: 53  LTGKKVIFHQVDLLDEP 69


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -3

Query: 98  YYIIYLLNVSFDKLI 54
           YY++Y  ++SF +L+
Sbjct: 565 YYVLYATDISFPELV 579


>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -1

Query: 181 KINTIKFNEF*KIYYKQHFYL 119
           K  ++KF++F  +++KQ+ +L
Sbjct: 207 KKRSLKFSQFQLVHFKQNIFL 227


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 162 LMNSRKYIINNTFIYSKF*GILL 94
           L NS +YI +  F Y KF G+ L
Sbjct: 219 LNNSSQYINDACFNYGKFLGLSL 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 587,805
Number of Sequences: 5004
Number of extensions: 7692
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)