Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E20
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    28   0.78 
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   3.2  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   3.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   5.5  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    25   7.3  

>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 407 QIYFCINVIRVTFGLA-SLPRGNSTDLSLLLESPLDYKTYKEPSNIVFTQ 261
           +++F +N   V FG    LPRG   D+  L    L    +KE S I  T+
Sbjct: 193 ELWFELNHTLVGFGQTICLPRGRRCDMCTLSSKGLCPSAFKEKSGITITK 242


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 370 SASHRFREETVQTCPYSSSLLLIIRPIKNHLTLYLHNYSI 251
           S +  F+ + ++TC Y+S   L +   K  L +  H Y I
Sbjct: 762 SLAIHFKRQDIKTCSYASEWFLTLFAYKFPLEVVAHLYDI 801


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 51  NESLIIINIK*HSTATGAPRPACLVPHVSPQ 143
           NE +I + I+ H   T AP+P C++  V+P+
Sbjct: 335 NELVIDLVIENHKW-TNAPKPVCVIHSVTPE 364


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 254  YLLSCTSIGKHTRPRGATYTTGDPLALHNYRVHMP 150
            Y+L+  S  K  + R A+YT  DP +L +     P
Sbjct: 1526 YVLNKNSKNKSNKGRSASYTFSDPSSLEDSNRQKP 1560


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -1

Query: 362 ASLPRGNSTDLSLLLESPLDYKTYKEPSNIVFTQLFYLLSCTSIGKHTRPRGATYTTG 189
           + +P  NS  + + LE+  DY T +EPS+    Q     S           G +Y+ G
Sbjct: 405 SDMPTANS--MPVKLENGTDYSTSQEPSSNANNQSSPTSSINGKASSESANGTSYSKG 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,580
Number of Sequences: 5004
Number of extensions: 38162
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)