Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_E20
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357 31 0.60
02_03_0205 - 16411707-16412759,16413077-16413256,16413960-164144... 30 1.0
02_03_0214 + 16504237-16504251,16504447-16505055 30 1.4
02_02_0335 + 9063749-9064216,9064846-9064890,9065351-9065470,906... 29 1.8
05_01_0169 - 1170614-1172098 29 3.2
01_05_0602 + 23577328-23579805 28 4.2
06_01_1112 - 9157776-9158149,9158248-9161158 28 5.6
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668... 28 5.6
11_06_0730 - 26728241-26729335,26729998-26730660 27 7.4
08_02_1281 - 25849918-25851099 27 7.4
10_08_0054 + 14501357-14502478 27 9.8
>01_06_1161 + 35002125-35002414,35002511-35002648,35003658-35004357
Length = 375
Score = 31.1 bits (67), Expect = 0.60
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = -1
Query: 341 STDLSLLLESPLDYKTYKEPSNI------VFTQLFYLLSCTSIGKHTRPRGATYTTGDPL 180
S L LLE PLD + KE ++ VF Y+L S RP G T T +
Sbjct: 22 SAKLQALLEGPLDSRGQKEAVDVSRELGRVFMVSLYMLKPCS-NSSRRPEGVTRTAPETR 80
Query: 179 ALHNYRVHMPASLGRDMRDE 120
+ +H PA + R +E
Sbjct: 81 TDDSICLHTPARVKRVRSEE 100
>02_03_0205 -
16411707-16412759,16413077-16413256,16413960-16414498,
16414798-16414825
Length = 599
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = -2
Query: 445 HIITLKGGLVGTGKSIFVLTLYESRSASHRFRE 347
HII++ G++G GK+ F+ ++YES+ + F +
Sbjct: 43 HIISI-WGMIGIGKTSFIRSVYESKEITSMFEQ 74
>02_03_0214 + 16504237-16504251,16504447-16505055
Length = 207
Score = 29.9 bits (64), Expect = 1.4
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -2
Query: 445 HIITLKGGLVGTGKSIFVLTLYESRSASHRFRE 347
HII++ G++G GK+ F+ ++YES + F +
Sbjct: 42 HIISI-WGMIGVGKTSFIRSVYESEEITSMFEQ 73
>02_02_0335 +
9063749-9064216,9064846-9064890,9065351-9065470,
9066025-9067527
Length = 711
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 150 WHVHAVVVQGEGVAGRVRRASRPRVLPNGSTRQ 248
W +H V+ +G G R RR+ RP G Q
Sbjct: 124 WEIHDVMREGRGGGSRRRRSGRPLASAGGELHQ 156
>05_01_0169 - 1170614-1172098
Length = 494
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 138 PQRGWHVHAVVVQ--GEGVAGRVRRASRPRVL 227
P++G H V + GEG VRR RPRV+
Sbjct: 4 PEKGAAAHGAVAKNGGEGEVSAVRRPGRPRVV 35
>01_05_0602 + 23577328-23579805
Length = 825
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 294 GLIIKRRLEE*GQV--CTVSSRKRCEAERDSYNVNTKIDLP 410
GL+IKR LE + C + +C + D+Y V +ID P
Sbjct: 286 GLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEP 326
>06_01_1112 - 9157776-9158149,9158248-9161158
Length = 1094
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 322 SSSLLLIIRPIKNHLTLYLHNYSIYCRVLPLGSTR 218
SS L++ I+ I NHL + ++ CRVL + R
Sbjct: 820 SSGLVVAIKVIHNHLEHAMRSFDTECRVLRMARHR 854
>04_03_0961 + 21263735-21263773,21264157-21264279,21266774-21266847,
21266939-21267095,21267554-21267694,21267739-21267823,
21268810-21268903,21269041-21269239,21269515-21269549,
21270076-21270631,21270722-21270882,21271704-21271718,
21273078-21273330,21273439-21273562,21273688-21273788,
21274870-21274938,21275060-21275191,21275270-21275404,
21275489-21275551,21275636-21275881,21276007-21276285
Length = 1026
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 168 VVQGEGVAGRVRRASRPRVLPNGSTRQ*IE*LCKYNVRWFFI 293
VV+ GV G A+ RV PN + + ++ L + W ++
Sbjct: 959 VVEHYGVCGGGHYAAYRRVTPNSDSNEPVQSLASFRKEWLYV 1000
>11_06_0730 - 26728241-26729335,26729998-26730660
Length = 585
Score = 27.5 bits (58), Expect = 7.4
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 2/100 (2%)
Frame = -2
Query: 529 GRDGPRDMSRDTHRDPDXXXXXXXXXXSHIITLKGGLVGTGKSIFVLTLYESRSASHRFR 350
GRD RDM R R+ D +I + G+ G+GK+ + E
Sbjct: 289 GRDRERDMIRSMLREDDSLPSSSSRKCYSVICIY-GIPGSGKTTLAQYVCEYEKEDKDRY 347
Query: 349 EETVQTCPYSSSLLL--IIRPIKNHLTLYLHNYSIYCRVL 236
+TV S + L I R + +T H+ CR L
Sbjct: 348 FDTVMLIYVSKTYRLEDIFRDMLEEITQSRHSEISDCRGL 387
>08_02_1281 - 25849918-25851099
Length = 393
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +1
Query: 79 SNIAPRPARLAPRVS---SRMSRPSEAGMCTR*LCRARGSPVVYVAPLGLVCF 228
S+ APR APR+ +R+ R EA + R LC + PL + CF
Sbjct: 88 SSAAPRLRAAAPRLLPAYARLGRCDEALLVVRELCARDPGAARALYPLAVTCF 140
>10_08_0054 + 14501357-14502478
Length = 373
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 328 PYSSSLLLIIRPIKNHLTLYLHNYSIYCRVLPLG 227
PYSSS ++ +K H L + YS LP G
Sbjct: 16 PYSSSSAIVGGTVKGHHILKIEGYSYIKEKLPAG 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,686,539
Number of Sequences: 37544
Number of extensions: 275261
Number of successful extensions: 678
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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