Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_E20
(545 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC067266-1|AAH67266.1| 1461|Homo sapiens periaxin protein. 30 6.1
AF321191-1|AAK19279.1| 1461|Homo sapiens L-periaxin protein. 30 6.1
AF253515-1|AAN70985.1| 1957|Homo sapiens BAF250b subunit protein. 30 6.1
AB046840-1|BAB13446.1| 1398|Homo sapiens KIAA1620 protein protein. 30 6.1
BX784396-2|CAI19414.1| 4387|Homo sapiens vacuolar protein sortin... 29 8.0
BX784395-2|CAI19412.1| 4387|Homo sapiens vacuolar protein sortin... 29 8.0
BX682532-2|CAI23591.1| 4387|Homo sapiens vacuolar protein sortin... 29 8.0
AL162331-1|CAB82724.1| 2270|Homo sapiens hypothetical protein pr... 29 8.0
AL109757-2|CAI22116.1| 4387|Homo sapiens vacuolar protein sortin... 29 8.0
AL031296-2|CAI23164.1| 4387|Homo sapiens vacuolar protein sortin... 29 8.0
AL031276-2|CAI19223.1| 4387|Homo sapiens vacuolar protein sortin... 29 8.0
AJ608775-1|CAE75587.1| 4363|Homo sapiens VPS13D-2A protein protein. 29 8.0
AJ608774-1|CAE75586.1| 4388|Homo sapiens VPS13D-1A protein protein. 29 8.0
>BC067266-1|AAH67266.1| 1461|Homo sapiens periaxin protein.
Length = 1461
Score = 29.9 bits (64), Expect = 6.1
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 99 GAPRPACL-VPHV--SPQRGWHVHAVVVQGEGVAGRVRRASRPR 221
GA R CL +P V SP G H V +GEG AG + PR
Sbjct: 1267 GAERTFCLSLPDVELSPSGGNHAEYQVAEGEGEAGHKLKVRLPR 1310
>AF321191-1|AAK19279.1| 1461|Homo sapiens L-periaxin protein.
Length = 1461
Score = 29.9 bits (64), Expect = 6.1
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 99 GAPRPACL-VPHV--SPQRGWHVHAVVVQGEGVAGRVRRASRPR 221
GA R CL +P V SP G H V +GEG AG + PR
Sbjct: 1267 GAERTFCLSLPDVELSPSGGNHAEYQVAEGEGEAGHKLKVRLPR 1310
>AF253515-1|AAN70985.1| 1957|Homo sapiens BAF250b subunit protein.
Length = 1957
Score = 29.9 bits (64), Expect = 6.1
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = -1
Query: 353 PRGNSTDLSLLLESPLDYKTYKEPSNIVFTQLFYLLSCTSIGKHTRPRGATYTTGDPLAL 174
P N TD ++ + +++++ + PS++ Q Y+ S S+ TRP +Y T L+
Sbjct: 1199 PGMNRTDDMMVPDQRINHES-QWPSHVSQRQP-YMSSSASMQPITRPPQPSYQTPPSLSN 1256
Query: 173 HNYRVHMPASLGRDMRD 123
H R PAS R + +
Sbjct: 1257 HISRAPSPASFQRSLEN 1273
>AB046840-1|BAB13446.1| 1398|Homo sapiens KIAA1620 protein protein.
Length = 1398
Score = 29.9 bits (64), Expect = 6.1
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 99 GAPRPACL-VPHV--SPQRGWHVHAVVVQGEGVAGRVRRASRPR 221
GA R CL +P V SP G H V +GEG AG + PR
Sbjct: 1204 GAERTFCLSLPDVELSPSGGNHAEYQVAEGEGEAGHKLKVRLPR 1247
>BX784396-2|CAI19414.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 29.5 bits (63), Expect = 8.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 464 ERGSLVSYHNFKGRPRRNGQIYFCINVIRVTFGLASLPRGNSTDLSLLL 318
+RG++ H +G P+ N + + V SLPR NS+ LS+ L
Sbjct: 504 QRGTVTLLHKEQGTPQMNESAFMQLEFSDVKLLAESLPRRNSSLLSVRL 552
>BX784395-2|CAI19412.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 29.5 bits (63), Expect = 8.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 464 ERGSLVSYHNFKGRPRRNGQIYFCINVIRVTFGLASLPRGNSTDLSLLL 318
+RG++ H +G P+ N + + V SLPR NS+ LS+ L
Sbjct: 504 QRGTVTLLHKEQGTPQMNESAFMQLEFSDVKLLAESLPRRNSSLLSVRL 552
>BX682532-2|CAI23591.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 29.5 bits (63), Expect = 8.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 464 ERGSLVSYHNFKGRPRRNGQIYFCINVIRVTFGLASLPRGNSTDLSLLL 318
+RG++ H +G P+ N + + V SLPR NS+ LS+ L
Sbjct: 504 QRGTVTLLHKEQGTPQMNESAFMQLEFSDVKLLAESLPRRNSSLLSVRL 552
>AL162331-1|CAB82724.1| 2270|Homo sapiens hypothetical protein
protein.
Length = 2270
Score = 29.5 bits (63), Expect = 8.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 464 ERGSLVSYHNFKGRPRRNGQIYFCINVIRVTFGLASLPRGNSTDLSLLL 318
+RG++ H +G P+ N + + V SLPR NS+ LS+ L
Sbjct: 504 QRGTVTLLHKEQGTPQMNESAFMQLEFSDVKLLAESLPRRNSSLLSVRL 552
>AL109757-2|CAI22116.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 29.5 bits (63), Expect = 8.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 464 ERGSLVSYHNFKGRPRRNGQIYFCINVIRVTFGLASLPRGNSTDLSLLL 318
+RG++ H +G P+ N + + V SLPR NS+ LS+ L
Sbjct: 504 QRGTVTLLHKEQGTPQMNESAFMQLEFSDVKLLAESLPRRNSSLLSVRL 552
>AL031296-2|CAI23164.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 29.5 bits (63), Expect = 8.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 464 ERGSLVSYHNFKGRPRRNGQIYFCINVIRVTFGLASLPRGNSTDLSLLL 318
+RG++ H +G P+ N + + V SLPR NS+ LS+ L
Sbjct: 504 QRGTVTLLHKEQGTPQMNESAFMQLEFSDVKLLAESLPRRNSSLLSVRL 552
>AL031276-2|CAI19223.1| 4387|Homo sapiens vacuolar protein sorting
13 homolog D (S. cerevisiae) protein.
Length = 4387
Score = 29.5 bits (63), Expect = 8.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 464 ERGSLVSYHNFKGRPRRNGQIYFCINVIRVTFGLASLPRGNSTDLSLLL 318
+RG++ H +G P+ N + + V SLPR NS+ LS+ L
Sbjct: 504 QRGTVTLLHKEQGTPQMNESAFMQLEFSDVKLLAESLPRRNSSLLSVRL 552
>AJ608775-1|CAE75587.1| 4363|Homo sapiens VPS13D-2A protein protein.
Length = 4363
Score = 29.5 bits (63), Expect = 8.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 464 ERGSLVSYHNFKGRPRRNGQIYFCINVIRVTFGLASLPRGNSTDLSLLL 318
+RG++ H +G P+ N + + V SLPR NS+ LS+ L
Sbjct: 504 QRGTVTLLHKEQGTPQMNESAFMQLEFSDVKLLAESLPRRNSSLLSVRL 552
>AJ608774-1|CAE75586.1| 4388|Homo sapiens VPS13D-1A protein protein.
Length = 4388
Score = 29.5 bits (63), Expect = 8.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 464 ERGSLVSYHNFKGRPRRNGQIYFCINVIRVTFGLASLPRGNSTDLSLLL 318
+RG++ H +G P+ N + + V SLPR NS+ LS+ L
Sbjct: 504 QRGTVTLLHKEQGTPQMNESAFMQLEFSDVKLLAESLPRRNSSLLSVRL 552
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,000,798
Number of Sequences: 237096
Number of extensions: 1441001
Number of successful extensions: 2957
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2957
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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