Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E20
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78414-2|CAB01668.3|  308|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U97403-10|AAB52476.3|  319|Caenorhabditis elegans Hypothetical p...    27   6.7  
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    27   6.7  
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC024780-2|AAO25975.1|  275|Caenorhabditis elegans Serpentine re...    27   8.8  

>Z78414-2|CAB01668.3|  308|Caenorhabditis elegans Hypothetical
           protein W09D12.2 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 106 GAP-VAVLCYFIFMIISDSLCIERSFYRLIKCKILV 2
           G P   ++C+F  +I  D   +   FYRL++  I V
Sbjct: 12  GVPSFCLMCFFFILIFIDRNNLSNPFYRLVQIDIFV 47


>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
           protein T08A11.1 protein.
          Length = 1872

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 343 TVQTCPYSSSLLLIIRPIKNHLTLYLHNYSIYC 245
           T+  CP+   ++ +  P K  L LYL+  +I C
Sbjct: 49  TIDKCPHCDPMIFMNFPKKKQLKLYLNFRTIVC 81


>U97403-10|AAB52476.3|  319|Caenorhabditis elegans Hypothetical
           protein T10E9.9 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 236 SIGKHTRPRGATYTTGDPLALHNYRVHMPASLG 138
           +IGKH    G   ++  PL   N RVH  A LG
Sbjct: 163 TIGKHEDKLGVRSSSTCPLHFDNVRVHKSAILG 195


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
           protein T08A11.1 protein.
          Length = 1872

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 343 TVQTCPYSSSLLLIIRPIKNHLTLYLHNYSIYC 245
           T+  CP+   ++ +  P K  L LYL+  +I C
Sbjct: 49  TIDKCPHCDPMIFMNFPKKKQLKLYLNFRTIVC 81


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
           protein C48E7.6 protein.
          Length = 1764

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 386 VIRVTFGLASLPRGNSTDLSLL-LESPLDYKTYKEPSN 276
           ++RV  G A L   N  ++SL+  E P+ YK  K+P+N
Sbjct: 784 MLRVPVGGAVLIDKNLLEISLVDAERPIIYKVMKQPNN 821


>AC024780-2|AAO25975.1|  275|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 48 protein.
          Length = 275

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 91  VLCYFIFMIISDSLCIERSFYRLIKCKILV 2
           VL  F+ +II+ S   ++SFYRLI   +++
Sbjct: 17  VLTAFLVIIITTSHLFQQSFYRLIAIHLVI 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,507,565
Number of Sequences: 27780
Number of extensions: 222428
Number of successful extensions: 475
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)