Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E20
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   1.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.5  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   3.5  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -2

Query: 436 TLKGGLVGTGKSIFVLTLYESRSASHRFREETVQTCPYSSS 314
           TLK G+ G   S     LY S  ASH      V T P+  S
Sbjct: 246 TLKNGICGMALSPVTNNLYYSPLASHGL--YYVNTAPFMKS 284


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/42 (26%), Positives = 16/42 (38%)
 Frame = -1

Query: 392 INVIRVTFGLASLPRGNSTDLSLLLESPLDYKTYKEPSNIVF 267
           INV    +    +P    +   L    P+  K   EP N+ F
Sbjct: 553 INVSEDAYRYLCMPENQDSQFLLEYRGPVTMKGKSEPMNVWF 594


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 11/42 (26%), Positives = 16/42 (38%)
 Frame = -1

Query: 392 INVIRVTFGLASLPRGNSTDLSLLLESPLDYKTYKEPSNIVF 267
           INV    +    +P    +   L    P+  K   EP N+ F
Sbjct: 553 INVSEDAYRYLCMPENQDSQFLLEYRGPVTMKGKSEPMNVWF 594


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,053
Number of Sequences: 438
Number of extensions: 2907
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)