Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E15
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    30   0.27 
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   1.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   1.9  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   4.4  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   4.4  

>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 321 SLKNGVATKILETGTDASATNDDTTEV-YFSAKDGIYVFDAKT 446
           +LK GV    ++TG+ ASATN    E+ Y    +   VFD  T
Sbjct: 254 TLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENGKVFDKNT 296


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 133 NSSDDTMSFSSLFSVTGAAFINPIKN 56
           N S  T SFS  FS TG   + PI+N
Sbjct: 193 NESFQTPSFSGSFSQTGTYQLTPIRN 218


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -3

Query: 499 LTIPIKLSVFVPYVSVL 449
           LTIP++LS+ +PY+S L
Sbjct: 772 LTIPVRLSLLLPYMSYL 788


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 154 YWTNSFMNSSDDTMSFSSLFSVTGAAF 74
           ++T  F+N+    +S S LFS+ GA F
Sbjct: 514 FFTTIFLNTYASMISSSDLFSILGAHF 540


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = -3

Query: 436 SKTYIPSLAEK*TXXXXXXXXXXXXXXSRILVATPFFNE*RPLYSFSPLSLTSASTKN 263
           S T +PS++                       + PF N  +P+ + SP+++T++S  N
Sbjct: 645 SDTAVPSMSFANNISSRSVISAATDSKPSTRTSPPFVNNTKPIVAKSPVTVTASSETN 702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,984
Number of Sequences: 5004
Number of extensions: 39262
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)