Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E15
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-80...    29   3.4  
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954...    29   3.4  
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008...    28   4.4  
02_02_0645 - 12599888-12600527,12602879-12603192                       28   5.9  
12_01_0107 - 843820-846335,846400-846511                               27   7.7  
02_05_1034 - 33649634-33649651,33649699-33649811,33649938-336500...    27   7.7  

>11_01_0107 -
           801148-803633,803727-803860,803990-804006,804321-804504,
           804819-804883
          Length = 961

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +3

Query: 270 VEADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTN 449
           VE D N+KG     G  S+ N VAT       D + ++++ TEV  +A+    + DA  +
Sbjct: 254 VETDGNEKGSFTDDG--SISNEVATTQSMVHMDGAGSDNNFTEVQSAAEGKCALSDANLD 311

Query: 450 KTE 458
             E
Sbjct: 312 SQE 314


>02_02_0375 +
           9543411-9543872,9547222-9547290,9547382-9547384,
           9548336-9548422,9549027-9549094,9549192-9549333
          Length = 276

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 63  IGLIKAAPVTEN-NDEKLIVSSELFINEFVQYSSKYDIVSLTVPLNSL 203
           I + K+ PV +  +  KL+V+ E+   EF+     YD+  + VP NS+
Sbjct: 167 IVIFKSPPVLQEVHKGKLVVNGEVRNEEFILEPPSYDMNPVQVPENSV 214


>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
            26901025-26901247,26901662-26901666,26901796-26901924,
            26902697-26902894,26903138-26903356,26903461-26903699,
            26903797-26903888,26904009-26904224,26904327-26904554,
            26904631-26904722,26904806-26904899,26905475-26905567,
            26905667-26906640,26906727-26906841,26907135-26908895
          Length = 1687

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 75   KAAPVTENNDEKLIVSSELFINEFVQYSSKYDIVSLTVPLNSL 203
            +AAP+ E+      VSS L ++E ++ S   D VS   P   L
Sbjct: 1575 EAAPILEDRGMAPSVSSRLSLDEIIEISCDLDAVSALPPAKPL 1617


>02_02_0645 - 12599888-12600527,12602879-12603192
          Length = 317

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -2

Query: 509 TVCFNYTDQTISVRSICFSLICFRIENVYTI 417
           T C  Y D   SV   C  L CFR+   YT+
Sbjct: 141 TFCSLYGDVCASVGKACPELKCFRLNERYTL 171


>12_01_0107 - 843820-846335,846400-846511
          Length = 875

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +3

Query: 270 VEADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTN 449
           VE D N+KG     G  S+ N VAT       D +  +++ TEV  +A+    + DA  +
Sbjct: 168 VETDGNEKGSFTDDG--SISNEVATTQSMVHMDGAGFDNNFTEVQSAAEGKCTLSDANLD 225

Query: 450 KTE 458
             E
Sbjct: 226 SQE 228


>02_05_1034 -
           33649634-33649651,33649699-33649811,33649938-33650029,
           33650212-33650321,33650444-33650517,33650877-33650950,
           33651091-33651158
          Length = 182

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 381 NDDTTEVYFSAKDGIYVFDAKTNK 452
           N D +  Y   KDG  +FDA T K
Sbjct: 19  NQDNSLFYVGTKDGFRIFDAHTGK 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,299,349
Number of Sequences: 37544
Number of extensions: 208952
Number of successful extensions: 435
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)