Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E15
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    35   0.046
U49947-6|AAA93424.1|   85|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    29   3.0  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    29   3.0  
Z71258-14|CAN86574.1|  201|Caenorhabditis elegans Hypothetical p...    28   5.3  
AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork head/HNF-3...    27   9.2  

>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
           protein Y39D8B.1 protein.
          Length = 1372

 Score = 34.7 bits (76), Expect = 0.046
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
 Frame = +3

Query: 282 VNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTET 461
           + D G++E+       +GV   + +         D+     F  KDG  ++  K N TE 
Sbjct: 489 MEDTGQEEWMNFVLEASGVTETVEKMRIAEEKEQDEERRKDFVDKDGRPMYFTKENVTEI 548

Query: 462 YG----TNTDSLIGIVKTNGSDVLYVL 530
           YG    T  D + GI KT   D L  L
Sbjct: 549 YGEYEATKIDLINGIYKTMSKDQLDAL 575


>U49947-6|AAA93424.1|   85|Caenorhabditis elegans Hypothetical
           protein C30G4.5 protein.
          Length = 85

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 169 SYLDEYWTNSFMNSSDDTMSFSSLFSVTGAAFIN 68
           S LDE W +S  + SDD++   S  S TG  F N
Sbjct: 40  SILDEKWRSSCSDDSDDSLPVGSYIS-TGQCFFN 72


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 87  VTENNDEKLIVSSELFINEFVQYSSKYDIV 176
           VT+  D   + +S+LFI+ FV+ + KYD++
Sbjct: 420 VTDARDHLKMQNSKLFISSFVRDNLKYDLI 449


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 87  VTENNDEKLIVSSELFINEFVQYSSKYDIV 176
           VT+  D   + +S+LFI+ FV+ + KYD++
Sbjct: 420 VTDARDHLKMQNSKLFISSFVRDNLKYDLI 449


>Z71258-14|CAN86574.1|  201|Caenorhabditis elegans Hypothetical
           protein C01H6.8a protein.
          Length = 201

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 19/73 (26%), Positives = 30/73 (41%)
 Frame = +3

Query: 291 KGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTNKTETYGT 470
           K   E K L   +     +I E   +  AT DD T +    +D +  F++    +ET+  
Sbjct: 61  KHANEKKDLDENELDYKKRIAEIEKELKATKDDHTRLLEKHEDYLRKFESPRTWSETFSK 120

Query: 471 NTDSLIGIVKTNG 509
            T    G +  NG
Sbjct: 121 YTGDAFGRLLFNG 133


>AF000262-2|AAN60527.1| 1764|Caenorhabditis elegans Hypothetical
            protein C48E7.6 protein.
          Length = 1764

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 339  ATKILETGTDASATNDDTTEVYFSA--KDGIYVFDAKTNKTETYGTNTDSLIGIV 497
            AT +  +  +AS   + +   + ++  K G   FD  TN +  Y TNTD   GIV
Sbjct: 1501 ATPLTTSQINASTLLNSSPRFFLTSPLKFGRLTFDPNTNYSTYYFTNTDIQKGIV 1555


>Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical
           protein F38A6.1a protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +3

Query: 270 VEADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTN 449
           +E + N K E+++K    L NG  +   +TG    AT+   + V ++A +        +N
Sbjct: 51  LETEKNRKREQKHK---MLPNGTTSGTSDTGNQVPATSSAASSVDYTAMNAQDYLPTYSN 107

Query: 450 KTETY 464
            T  Y
Sbjct: 108 TTLNY 112


>U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork
           head/HNF-3-like protein protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +3

Query: 270 VEADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYFSAKDGIYVFDAKTN 449
           +E + N K E+++K    L NG  +   +TG    AT+   + V ++A +        +N
Sbjct: 51  LETEKNRKREQKHK---MLPNGTTSGTSDTGNQVPATSSAASSVDYTAMNAQDYLPTYSN 107

Query: 450 KTETY 464
            T  Y
Sbjct: 108 TTLNY 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,440,159
Number of Sequences: 27780
Number of extensions: 213633
Number of successful extensions: 575
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)