Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E14
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    27   1.6  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    25   6.5  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 80   ILYRQWYDEVSIMIAGNSCIIVYKVLHP 163
            + YR +Y  V  +I G+ C + Y + HP
Sbjct: 1151 LAYRSYYAPVKCVIDGDLCEMYYSLPHP 1178


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +2

Query: 35  DVA--VSWDGLVFKVRVILYRQW 97
           DVA  +SWD LV+K  + +Y +W
Sbjct: 212 DVAKQMSWDLLVYKYMMYVYDKW 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,728
Number of Sequences: 5004
Number of extensions: 31305
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)