Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E14
         (427 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M64554-1|AAA51821.1|  661|Homo sapiens coagulation factor XIIIb ...    29   5.0  
M14057-1|AAA88042.1|  660|Homo sapiens F13A1 protein.                  29   5.0  
AY692223-1|AAT85802.1|  661|Homo sapiens coagulation factor XIII...    29   5.0  
AL353809-2|CAH72549.1|  661|Homo sapiens coagulation factor XIII...    29   5.0  
X74301-1|CAA52354.1| 1130|Homo sapiens (MHC) class II transactiv...    29   8.7  
U18259-1|AAA88861.1| 1130|Homo sapiens MHC class II transactivat...    29   8.7  
AY699071-1|AAU06586.1| 1107|Homo sapiens CIITA IV protein.             29   8.7  
AY084054-1|AAM15723.1|  546|Homo sapiens MHC class II transactiv...    29   8.7  

>M64554-1|AAA51821.1|  661|Homo sapiens coagulation factor XIIIb
           protein.
          Length = 661

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 154 YFVHNNTGVTCNHNRHFIIPLPI*NNAYLKH*PV 53
           Y +H +  +TCN  +  + P  + NN   KH PV
Sbjct: 368 YLLHGSNEITCNRGKWTLPPECVENNENCKHPPV 401


>M14057-1|AAA88042.1|  660|Homo sapiens F13A1 protein.
          Length = 660

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 154 YFVHNNTGVTCNHNRHFIIPLPI*NNAYLKH*PV 53
           Y +H +  +TCN  +  + P  + NN   KH PV
Sbjct: 367 YLLHGSNEITCNRGKWTLPPECVENNENCKHPPV 400


>AY692223-1|AAT85802.1|  661|Homo sapiens coagulation factor XIII, B
           polypeptide protein.
          Length = 661

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 154 YFVHNNTGVTCNHNRHFIIPLPI*NNAYLKH*PV 53
           Y +H +  +TCN  +  + P  + NN   KH PV
Sbjct: 368 YLLHGSNEITCNRGKWTLPPECVENNENCKHPPV 401


>AL353809-2|CAH72549.1|  661|Homo sapiens coagulation factor XIII, B
           polypeptide protein.
          Length = 661

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 154 YFVHNNTGVTCNHNRHFIIPLPI*NNAYLKH*PV 53
           Y +H +  +TCN  +  + P  + NN   KH PV
Sbjct: 368 YLLHGSNEITCNRGKWTLPPECVENNENCKHPPV 401


>X74301-1|CAA52354.1| 1130|Homo sapiens (MHC) class II transactivator
            protein.
          Length = 1130

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = -3

Query: 338  EIISLVYKTFRQNVSLHALIILSQYNMSDMMSSLLLDATSIYIAC*AT*CYYHSCLVEVG 159
            E +S +  TF Q  SL  L  LSQ N++D+ +  L +A     A       Y++C+ +VG
Sbjct: 1002 EGVSQLSATFPQLKSLETLN-LSQNNITDLGAYKLAEALPSLAASLLRLSLYNNCICDVG 1060

Query: 158  A 156
            A
Sbjct: 1061 A 1061


>U18259-1|AAA88861.1| 1130|Homo sapiens MHC class II transactivator
            CIITA protein.
          Length = 1130

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = -3

Query: 338  EIISLVYKTFRQNVSLHALIILSQYNMSDMMSSLLLDATSIYIAC*AT*CYYHSCLVEVG 159
            E +S +  TF Q  SL  L  LSQ N++D+ +  L +A     A       Y++C+ +VG
Sbjct: 1002 EGVSQLSATFPQLKSLETLN-LSQNNITDLGAYKLAEALPSLAASLLRLSLYNNCICDVG 1060

Query: 158  A 156
            A
Sbjct: 1061 A 1061


>AY699071-1|AAU06586.1| 1107|Homo sapiens CIITA IV protein.
          Length = 1107

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = -3

Query: 338  EIISLVYKTFRQNVSLHALIILSQYNMSDMMSSLLLDATSIYIAC*AT*CYYHSCLVEVG 159
            E +S +  TF Q  SL  L  LSQ N++D+ +  L +A     A       Y++C+ +VG
Sbjct: 979  EGVSQLSATFPQLKSLETLN-LSQNNITDLGAYKLAEALPSLAASLLRLSLYNNCICDVG 1037

Query: 158  A 156
            A
Sbjct: 1038 A 1038


>AY084054-1|AAM15723.1|  546|Homo sapiens MHC class II
           transactivator CIITAmed protein.
          Length = 546

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = -3

Query: 338 EIISLVYKTFRQNVSLHALIILSQYNMSDMMSSLLLDATSIYIAC*AT*CYYHSCLVEVG 159
           E +S +  TF Q  SL  L  LSQ N++D+ +  L +A     A       Y++C+ +VG
Sbjct: 418 EGVSQLSATFPQLKSLETLN-LSQNNITDLGAYKLAEALPSLAASLLRLSLYNNCICDVG 476

Query: 158 A 156
           A
Sbjct: 477 A 477


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,625,729
Number of Sequences: 237096
Number of extensions: 1030751
Number of successful extensions: 977
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3316445452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)