Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E14
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related (...    28   3.2  
AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidas...    27   5.6  
AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical ...    27   5.6  
U64609-5|AAB04602.2|  331|Caenorhabditis elegans Serpentine rece...    27   7.4  

>U41019-3|AAA82329.3|  531|Caenorhabditis elegans Sop-2 related
           (ectopic expressionof hox genes) protein 3 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 154 YFVHNNTGVTCNHNRHF 104
           YF H  T  TC +NRHF
Sbjct: 290 YFAHKVTTKTCRNNRHF 306


>AM748824-1|CAO72178.1|  512|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 357 IKYSLIRNNQSCL*NISSKRKFTRLDNIITIQYVRYDVIPSL 232
           +K  ++ N +  L N   K +FT  D+II   + RYD   SL
Sbjct: 295 LKPYILNNKEWYLQNEKYKPQFTTFDSIIITGWQRYDHFASL 336


>AL033513-1|CAA22078.2|  512|Caenorhabditis elegans Hypothetical
           protein Y70D2A.2 protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 357 IKYSLIRNNQSCL*NISSKRKFTRLDNIITIQYVRYDVIPSL 232
           +K  ++ N +  L N   K +FT  D+II   + RYD   SL
Sbjct: 295 LKPYILNNKEWYLQNEKYKPQFTTFDSIIITGWQRYDHFASL 336


>U64609-5|AAB04602.2|  331|Caenorhabditis elegans Serpentine
           receptor, class m protein1 protein.
          Length = 331

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -1

Query: 274 YHNTICQI*CHPFSWTQLVYISPAKLLSVIITVV**RWVQYFVHNNTGVT 125
           Y  T+      P SW   +YI    +++ +I +V    ++Y +H  +  T
Sbjct: 188 YDYTLNDFVADPISWACTIYIMAVLVITTVIAMVCWTIIRYEIHKGSRST 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,071,810
Number of Sequences: 27780
Number of extensions: 172660
Number of successful extensions: 261
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)