Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E14
         (427 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    23   1.1  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    23   1.1  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    23   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   3.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   3.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   3.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   3.3  

>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 120 LQVTPV-LLCTKYCTHLY*TTVIITLSSLAG 209
           +++T V LLC  YC  ++  TV I  S  AG
Sbjct: 1   MKITIVSLLCVIYCALVHADTVAILCSQKAG 31


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 120 LQVTPV-LLCTKYCTHLY*TTVIITLSSLAG 209
           +++T V LLC  YC  ++  TV I  S  AG
Sbjct: 1   MKITIVSLLCVIYCALVHADTVAILCSQKAG 31


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 154 YFVHNNTGVTCNHNRHFIIP 95
           YFV     + CN  RH I P
Sbjct: 20  YFVTPTMSIKCNCKRHVIKP 39


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 421 ITTSINTSYLSSFSQSGT 368
           +TT+INT   S  S SGT
Sbjct: 835 VTTTINTPTTSVISMSGT 852


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 59  LVFKVRVILYRQWYD 103
           L ++V  +L +QWYD
Sbjct: 105 LKYEVEFLLQQQWYD 119


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 59  LVFKVRVILYRQWYD 103
           L ++V  +L +QWYD
Sbjct: 105 LKYEVEFLLQQQWYD 119


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 59  LVFKVRVILYRQWYD 103
           L ++V  +L +QWYD
Sbjct: 156 LKYEVEFLLQQQWYD 170


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 59  LVFKVRVILYRQWYD 103
           L ++V  +L +QWYD
Sbjct: 105 LKYEVEFLLQQQWYD 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,406
Number of Sequences: 438
Number of extensions: 2565
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)