Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_E13
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 242 2e-65
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 234 7e-63
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 126 2e-30
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 111 5e-26
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 32 0.050
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 31 0.15
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.15
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 1.1
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 27 1.4
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 27 1.9
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 27 1.9
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 3.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.3
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.8
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 7.6
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 25 7.6
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 7.6
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 242 bits (593), Expect = 2e-65
Identities = 106/157 (67%), Positives = 125/157 (79%)
Frame = +3
Query: 90 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 269
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 270 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 449
+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 450 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 560
+IR++AD C+GLQGFL+FH LL+ERL
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERL 157
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 234 bits (572), Expect = 7e-63
Identities = 107/162 (66%), Positives = 127/162 (78%), Gaps = 5/162 (3%)
Frame = +3
Query: 90 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 254
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 255 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 434
TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 435 DLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 560
D VL+RIR++AD C+GLQGFL+FH LL+ERL
Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERL 161
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 126 bits (304), Expect = 2e-30
Identities = 61/157 (38%), Positives = 86/157 (54%)
Frame = +3
Query: 90 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 269
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 270 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 449
+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 450 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 560
+R+ A+ C LQGF + H LL+ ++
Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKI 155
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 111 bits (268), Expect = 5e-26
Identities = 58/158 (36%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Frame = +3
Query: 93 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 272
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 273 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVL 446
+PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 447 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERL 560
D I + AD L+GF + H L+ERL
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERL 157
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 32.3 bits (70), Expect = 0.050
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Frame = +1
Query: 130 SRSEMPAGSCIALSTASNLM--VRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSIL 300
SRS P + ++S A+ Q+T P+ V + TP T SS L S+ P+ SSSIL
Sbjct: 346 SRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTPITSSSV---LNSSTPITSSSIL 402
Query: 301 N-PL*LTRSALAHTDSCFIQNN-LSLVRRMPQTTMLVVTTPL 420
N +T S++ ++ + ++ L+ + +T+L +TP+
Sbjct: 403 NTSTPITSSSVLNSSTPITSSSILNSSTPITSSTVLNSSTPI 444
Score = 31.5 bits (68), Expect = 0.088
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+S+ + P + S + S ++++S L +T + V + TP T S+A
Sbjct: 1221 STPITSSSVLNSSTPITSSSI-LNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSTA-- 1277
Query: 259 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
L ++ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 1278 -LNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNT 1328
Score = 29.9 bits (64), Expect = 0.27
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+S+ + P + S + S +++++ L +T S + + TP T SS
Sbjct: 945 STPITSSSVLNSSTPITSSTV-LNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSV-- 1001
Query: 259 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
L ++ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 1002 -LNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTVVNT 1052
Score = 29.5 bits (63), Expect = 0.35
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Frame = +1
Query: 82 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 255
+T S+S+ + P S S + + + I ST N +T + V + TP T S+A
Sbjct: 453 STPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA- 509
Query: 256 PELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
L ++ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 510 --LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNT 560
Score = 29.5 bits (63), Expect = 0.35
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+S+ + P + S + S ++++S L +T + V T TP T S+
Sbjct: 789 STPITSSSVLNSSTPITSSTV-LNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV-- 845
Query: 259 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
+ S+ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 846 -VNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNT 896
Score = 29.5 bits (63), Expect = 0.35
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPE 261
+T S+S+ + P + S + S +++++ L +T S + ++ + SS+
Sbjct: 3177 STAITSSSIVNSSTPITSSSV-LNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSS--V 3233
Query: 262 LASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
L S+ P+ SSS+LN +T S + +T S I ++ L P T+ VV T
Sbjct: 3234 LNSSTPITSSSVLNSSTPITSSTVVNT-STPITSSSVLNSSTPITSSTVVNT 3284
Score = 29.1 bits (62), Expect = 0.47
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Frame = +1
Query: 82 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 255
+T S+S+ + P S S + + + I STA N +T S + + TP T S+A
Sbjct: 633 STPITSSSVLNSSTPITSSSVLNSSTPITSSTALNTST--PITSSSVLNSSTPITSSTA- 689
Query: 256 PELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TMLVVTTPL 420
L ++ P+ SSS+LN S+ A S I ++ L P T T L +TP+
Sbjct: 690 --LNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPI 744
Score = 29.1 bits (62), Expect = 0.47
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Frame = +1
Query: 97 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 273
S +L T S S + + + I STA N +T S + + TP T S+A L ++
Sbjct: 687 STALNTSTPITSSSVLNSSTAITSSTALNTST--PITSSSVLNSSTPITSSTA---LNTS 741
Query: 274 FPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
P+ SSS+LN S+ S I ++ L P T+ VV T
Sbjct: 742 TPITSSSVLNSSTPITSSSILNSSTPITSSSVLNSSTPITSSTVVNT 788
Score = 28.7 bits (61), Expect = 0.62
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+++ + P + S + S +++++ L +T S + + TP T S+A
Sbjct: 1725 STPITSSTVVNSSTPITSSTV-VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTA-- 1781
Query: 259 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
L ++ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 1782 -LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNT 1832
Score = 28.7 bits (61), Expect = 0.62
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Frame = +1
Query: 97 SASLYTLAKPESRSEMPAGSCIALST--ASNLMVRCQLTRPSGVETTPSTRSSARPELAS 270
S + +L S + + + S + ST S+ +V S ST ++ L +
Sbjct: 2565 STPITSLTALNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNT 2624
Query: 271 TFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
+ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 2625 STPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNT 2672
Score = 28.7 bits (61), Expect = 0.62
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+++ + P + S + S +++++ L +T S + + TP T S+A
Sbjct: 2793 STPITSSTVVNTSTPITSSTV-VNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTA-- 2849
Query: 259 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
L ++ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 2850 -LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNT 2900
Score = 28.7 bits (61), Expect = 0.62
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Frame = +1
Query: 82 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 255
+T S+++ + P S S + + + I ST N +T + V + TP T S+A
Sbjct: 2889 STPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA- 2945
Query: 256 PELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
L ++ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 2946 --LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNT 2996
Score = 28.3 bits (60), Expect = 0.82
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+++ + P + S + S +++++ L +T S + + TP T S+A
Sbjct: 1557 STPITSSTVVNTSTPITSSSV-VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTA-- 1613
Query: 259 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV--TTPL 420
L ++ P+ SSS+LN S+ S I ++ +L P T+ VV +TP+
Sbjct: 1614 -LNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPI 1668
Score = 28.3 bits (60), Expect = 0.82
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Frame = +1
Query: 97 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTF 276
S +L T S S + + + I STA N +T S + ++ + SS+ L S+
Sbjct: 3303 STTLNTSTPITSSSVLNSSTAITSSTALNTST--PITSSSVLNSSTAITSSSI--LNSST 3358
Query: 277 PVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV--TTPL 420
PV SSS+LN S+ S I ++ +L P T+ V+ +TP+
Sbjct: 3359 PVTSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 3408
Score = 27.9 bits (59), Expect = 1.1
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+S+ + P + S + S +++++ L +T + + T TP T SS
Sbjct: 405 STPITSSSVLNSSTPITSSSI-LNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSV-- 461
Query: 259 ELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNN-LSLVRRMPQTTMLVVTTPL 420
L S+ P+ SSS+LN +T S + +T + + ++ + +T L +TP+
Sbjct: 462 -LNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPI 516
Score = 27.9 bits (59), Expect = 1.1
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+S+ + P + S + + +++++S L +T S + + TP T S+
Sbjct: 2397 STPITSSSVLNSSTPITSSTV-VNTSTSITSSSVLNSSTPITSSSVLNSSTPITSSTV-- 2453
Query: 259 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
+ S+ P+ SSS+LN S+ A S I ++ L P T+ VV T
Sbjct: 2454 -VNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNT 2504
Score = 27.5 bits (58), Expect = 1.4
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Frame = +1
Query: 136 SEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTF-----PVPSSSIL 300
S P S AL+T++ + L + + T+ S +S+ P +ST P+ SSS+L
Sbjct: 2096 SSTPITSSTALNTSTPITSSSVLNSSTPI-TSSSVLNSSTPITSSTVVNSSTPITSSSVL 2154
Query: 301 NPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV--TTPL 420
N S+ A S I ++ L P T+ VV +TP+
Sbjct: 2155 NSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNSSTPI 2196
Score = 27.1 bits (57), Expect = 1.9
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = +1
Query: 136 SEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILNPL* 312
S S ++++S L +T S + T TP T SS L S+ P+ SSSILN
Sbjct: 374 SPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSV---LNSSTPITSSSILNSST 430
Query: 313 LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV--TTPL 420
S+ S I ++ +L P T+ V+ +TP+
Sbjct: 431 PITSSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 468
Score = 27.1 bits (57), Expect = 1.9
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = +1
Query: 154 SCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILNPL*LTRSAL 330
S ++++S L +T + + T TP T SS L S+ P+ SSS+LN S+
Sbjct: 608 SSTPITSSSVLNSSTPITSSTALNTSTPITSSSV---LNSSTPITSSSVLNSSTPITSST 664
Query: 331 AHTDSCFIQNNLSLVRRMPQT--TMLVVTTPL 420
A S I ++ L P T T L +TP+
Sbjct: 665 ALNTSTPITSSSVLNSSTPITSSTALNTSTPI 696
Score = 27.1 bits (57), Expect = 1.9
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Frame = +1
Query: 97 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 273
S +L T S S + + + I ST N +T + V + TP T S+A L ++
Sbjct: 1023 STALNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA---LNTS 1077
Query: 274 FPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
P+ SSS+LN S+ S I ++ L P T+ VV T
Sbjct: 1078 TPITSSSVLNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNT 1124
Score = 27.1 bits (57), Expect = 1.9
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = +1
Query: 136 SEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTF-----PVPSSSIL 300
S P S AL+T++ + L + + T+ S +S+ P +ST P+ SSS+L
Sbjct: 1904 SSTPITSSTALNTSTPITSSSVLNSSTPI-TSSSVLNSSTPITSSTVVNSSTPITSSSVL 1962
Query: 301 NPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
N S+ A S I ++ L P T+ V+ T
Sbjct: 1963 NSSTPITSSTALNTSTPITSSSVLNSSTPITSSSVLNT 2000
Score = 27.1 bits (57), Expect = 1.9
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Frame = +1
Query: 82 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 255
+T S+S+ + P S S + + + I ST N +T S + + TP T S+A
Sbjct: 1917 STPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNSST--PITSSSVLNSSTPITSSTA- 1973
Query: 256 PELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
L ++ P+ SSS+LN +T S++ +T S I ++ L P T+ VV T
Sbjct: 1974 --LNTSTPITSSSVLNSSTPITSSSVLNT-STPITSSSVLNSSTPITSSTVVNT 2024
Score = 27.1 bits (57), Expect = 1.9
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Frame = +1
Query: 82 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 255
+T S+S+ + P S S + + + I ST N +T + V + TP T S+A
Sbjct: 1989 STPITSSSVLNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA- 2045
Query: 256 PELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TMLVVTTPL 420
L ++ P+ SSS+LN S+ A S I ++ L P T T+L +TP+
Sbjct: 2046 --LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPI 2100
Score = 27.1 bits (57), Expect = 1.9
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 3/116 (2%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+S+ + P + S + + ++++S L +T + V T TP T S+A
Sbjct: 2721 STPITSSSVLNSSTPITSSTV-VNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTA-- 2777
Query: 259 ELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNN-LSLVRRMPQTTMLVVTTPL 420
L ++ P+ SSS+LN +T S + +T + + ++ + +T+L +TP+
Sbjct: 2778 -LNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPI 2832
Score = 26.6 bits (56), Expect = 2.5
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+++ + P + S + S +++++ L +T S + + TP T S+A
Sbjct: 1821 STPITSSTVVNTSTPITSSTV-VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTA-- 1877
Query: 259 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV--TTPL 420
L ++ P+ SSS+LN S+ S I ++ +L P T+ V+ +TP+
Sbjct: 1878 -LNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 1932
Score = 26.6 bits (56), Expect = 2.5
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+++ + P + S + S +++++ L +T S + + TP T S+A
Sbjct: 2013 STPITSSTVVNTSTPITSSTV-VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTA-- 2069
Query: 259 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV--TTPL 420
L ++ P+ SSS+LN S+ S I ++ +L P T+ V+ +TP+
Sbjct: 2070 -LNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 2124
Score = 26.6 bits (56), Expect = 2.5
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Frame = +1
Query: 82 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 255
+T S+++ + P S S + + + I ST N +T + V + TP T S+A
Sbjct: 2661 STPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA- 2717
Query: 256 PELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
L ++ P+ SSS+LN +T S + +T S I ++ L P T+ VV T
Sbjct: 2718 --LNTSTPITSSSVLNSSTPITSSTVVNT-STPITSSSVLNSSTPITSSTVVNT 2768
Score = 26.2 bits (55), Expect = 3.3
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Frame = +1
Query: 82 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 255
+T S+++ + P S S + + + I ST N +TR S + + TP T S+
Sbjct: 549 STPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTST--PITRYSVLNSSTPITSSTV- 605
Query: 256 PELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV--TTPL 420
L S+ P+ SSS+LN S+ A S I ++ L P T+ V+ +TP+
Sbjct: 606 --LNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSSVLNSSTPI 660
Score = 26.2 bits (55), Expect = 3.3
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+++ + P + S + S +++++ L +T S + + TP T S+
Sbjct: 1041 STPITSSTVVNTSTPITSSTV-VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV-- 1097
Query: 259 ELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV--TTPL 420
L S+ P+ SSS+LN +T S + +T S I ++ +L P T+ V+ +TP+
Sbjct: 1098 -LNSSTPITSSSVLNSSTPITSSTVVNT-STPITSSTALNTSTPITSSSVLNSSTPI 1152
Score = 26.2 bits (55), Expect = 3.3
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Frame = +1
Query: 97 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 273
S +L T S S + + + I ST N +T + V + TP T S+A L ++
Sbjct: 1803 STALNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA---LNTS 1857
Query: 274 FPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQT--TMLVVTTPL 420
P+ SSS+LN S+ A S I ++ L P T T+L +TP+
Sbjct: 1858 TPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTVLNSSTPI 1908
Score = 26.2 bits (55), Expect = 3.3
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Frame = +1
Query: 82 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 255
+T S+S+ + P S S + + + I ST N +T S + + TP T S+A
Sbjct: 2109 STPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNSST--PITSSSVLNSSTPITSSTA- 2165
Query: 256 PELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
L ++ P+ SSS+LN S+ S I ++ + P T+ VV T
Sbjct: 2166 --LNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNT 2216
Score = 26.2 bits (55), Expect = 3.3
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+++ + P + S + S +++++ + +T + V + TP T S+A
Sbjct: 2253 STPITSSTVVNTSTPITSSTV-VNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTA-- 2309
Query: 259 ELASTFPVPSSSILN-PL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
L ++ P+ SSS+LN +T S + +T S I ++ L P T+ VV T
Sbjct: 2310 -LNTSTPITSSSVLNSSTPITSSTVVNT-STPITSSSVLNSSTPITSSTVVNT 2360
Score = 25.8 bits (54), Expect = 4.4
Identities = 27/111 (24%), Positives = 53/111 (47%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPE 261
+T S++ + P + S + S A++++S + +T S + ++ + SS+
Sbjct: 3069 STPITSSTALNTSTPITSSSV-LNSSTAITSSSIVNSSTPITSSSVLNSSTAITSSSI-- 3125
Query: 262 LASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
L S+ P+ SSSILN S+ S I ++ +L P T+ V+ +
Sbjct: 3126 LNSSTPITSSSILNSSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNS 3176
Score = 25.8 bits (54), Expect = 4.4
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 226 TTPSTRSSARPELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLV 405
+TP T S+A L ++ P+ SSS+LN S+ S I ++ +L P T+ V
Sbjct: 3381 STPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTALNTSTPITSSTV 3437
Query: 406 V--TTPL 420
V +TP+
Sbjct: 3438 VNSSTPI 3444
Score = 25.0 bits (52), Expect = 7.6
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Frame = +1
Query: 82 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 258
+T S+++ + P + S + S +++++ L +T S + + TP T S+
Sbjct: 885 STPITSSTVVNTSTPITSSTV-VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTG-- 941
Query: 259 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV--TTPL 420
L ++ P+ SSS+LN S+ S I ++ +L P T+ V+ +TP+
Sbjct: 942 -LNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 996
Score = 25.0 bits (52), Expect = 7.6
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Frame = +1
Query: 97 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 273
S +L T S S + + + I STA N +T S + + TP T S+ + ++
Sbjct: 1275 STALNTSIPITSSSVLNSSTPITSSTALNTST--SITSSSVLNSSTPITSSTV---VNTS 1329
Query: 274 FPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
P+ SSS+LN S+ S I ++ + P T+ VV T
Sbjct: 1330 TPITSSSVLNSSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNT 1376
Score = 25.0 bits (52), Expect = 7.6
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Frame = +1
Query: 97 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 273
S +L T S S + + + I ST N +T + + T TP T S+ + S+
Sbjct: 3387 STALNTSTPITSSSVLNSSTPITSSTVVNSST--PITSSTALNTSTPITSSTV---VNSS 3441
Query: 274 FPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVVTT 414
P+ SSS+LN S+ S I ++ L P ++ V+T+
Sbjct: 3442 TPITSSSVLNSSTAIASSSILNSSTPITSSSVLNSSTPISSSTVITS 3488
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 30.7 bits (66), Expect = 0.15
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Frame = +1
Query: 100 ASLYTLAKPESRSEMPAGSCIALSTASNLMVR-CQLTRPSGVETT---PSTRSSARPEL- 264
A+ Y + E + ++ G I TA N + + R G + P+T+S A+ +
Sbjct: 57 AAYYVVRDAEKKGKLSRGGTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTL 116
Query: 265 ----ASTFPVPSSSILNPL*LTRSALAHTDS 345
A PVP + NPL A H +S
Sbjct: 117 KFLGAEVHPVPVAPFSNPLNYNHQARRHAES 147
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.15
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 130 SRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN 303
S S + + + ST S+L ++PS T+ ST SSA P S+ + SSS+++
Sbjct: 160 SSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVS 217
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +1
Query: 109 YTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPS 288
++ A+ + S+ + S + Q +PSGVE T ++R++A+ + ST + S
Sbjct: 12 FSYARALASSQSNKSNSTKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTESTGKITS 71
Query: 289 SS 294
+
Sbjct: 72 EA 73
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = -3
Query: 551 HEERSETRTGATTERVEDEESLEACALVSEFADAVEDQVYDFLSNGVVTTSIVVCGILLT 372
HE+ + +TG ++ +++E ++A D E+QV + S G + VV LL
Sbjct: 108 HEKPARPQTGEGSDNEDEDEDIDALIEDLYSQDQEEEQVEEEESPGPAGAAKVVPEELLE 167
Query: 371 SDKLFWMKQLSV 336
+D + + + V
Sbjct: 168 TDPKYGLTESEV 179
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 259 ELASTFPVPSSSILNPL*LTRSALAHTDSCFIQNNLSLVRRMPQTTMLVV 408
E+ F VP +S LNP S +TD +++ N+ + R+ T +++
Sbjct: 218 EVKDLFYVPLTSFLNPKHQKISRFRNTDLLYVEFNIDKIPRIWGITAVIL 267
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 1.9
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +1
Query: 73 KKLNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSA 252
K LN V+ +A + S P+ +C + + + N + + TTP+T S
Sbjct: 82 KFLNKDFVTVDPLRIASVTTYSAQPSNNCSSATDSENDFQSFTIKSSTTYHTTPTTASEN 141
Query: 253 RPELASTFPVPSSSILNPL*LT 318
+ + T P +S+ N L L+
Sbjct: 142 KKIESITIP-DHASVYNDLPLS 162
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 211 PSGVETTPSTRSSARPELASTFPV 282
P+ VETTPST +SA + + F +
Sbjct: 350 PANVETTPSTATSAPKKSTAPFAI 373
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 3.3
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 124 PESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN 303
P S S + LST+S ++ T SG PST SS+ P +S P +S+L+
Sbjct: 483 PISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPST-SSSTPS-SSIISSPMTSVLS 540
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -3
Query: 455 DAVEDQVYDFLSNGVVT-TSIVVC 387
DA DQ+ +++ NG++T T IV C
Sbjct: 68 DATIDQLQNYMENGILTSTDIVHC 91
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 219 PRWSCQLASDHQVGCRAQGNTAPSRHFRSGLR 124
P SC+L S+H+ C + N++ S + + R
Sbjct: 110 PHLSCELPSEHREKCLKRRNSSLSSNLHANKR 141
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 319 RSALAHTDSCFIQNNLSLVRRMPQT 393
+S + HT++ NN SL+RR+ T
Sbjct: 605 KSLIQHTNNLLQSNNASLLRRLAAT 629
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 7.6
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 248 EERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGL 120
EE EG TP +T+R D+V++ + AG++D+ S L
Sbjct: 320 EEISEGEEYTPIEESKEPITVRRDSVIQIDESSAGLTDVISEL 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,591
Number of Sequences: 5004
Number of extensions: 53637
Number of successful extensions: 262
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -