Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_E11
(479 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 255 2e-69
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 116 2e-27
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 112 3e-26
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 68 6e-13
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.64
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 27 1.5
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 2.6
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 26 2.6
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 3.4
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 4.5
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 7.8
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 25 7.8
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 25 7.8
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 7.8
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 25 7.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 255 bits (625), Expect = 2e-69
Identities = 113/142 (79%), Positives = 131/142 (92%)
Frame = +1
Query: 10 TVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEW 189
+VPELTQQMFDA NMM A DPRHGRYLTVAA+FRG++SMKEVDEQ+ ++Q KNS+YFVEW
Sbjct: 285 SVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEW 344
Query: 190 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD 369
IP+NV AVC +PP+ LKM+ATFIGNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMD
Sbjct: 345 IPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMD 404
Query: 370 EMELTEAESNMNDLVSEYQQYQ 435
EME TEAESNMNDLVSEYQQYQ
Sbjct: 405 EMEFTEAESNMNDLVSEYQQYQ 426
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 116 bits (279), Expect = 2e-27
Identities = 51/148 (34%), Positives = 85/148 (57%), Gaps = 8/148 (5%)
Frame = +1
Query: 10 TVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEW 189
+V E+T Q F+ N M CDPR GRY+ ++RG + ++V + I+ K + FV+W
Sbjct: 287 SVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDW 346
Query: 190 IPNNVKTAVCDIPPRGLK--------MAATFIGNSTAIQELFKRISEQFTAMFRRKAFLH 345
P K +CD PP+ ++ A + N+T+I E + R+ +F M+ ++AF+H
Sbjct: 347 CPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVH 406
Query: 346 WYTGEGMDEMELTEAESNMNDLVSEYQQ 429
WY GEGM+E E +EA ++ L +Y++
Sbjct: 407 WYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 112 bits (269), Expect = 3e-26
Identities = 49/148 (33%), Positives = 85/148 (57%), Gaps = 8/148 (5%)
Frame = +1
Query: 10 TVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEW 189
+V E+T Q F+ N M CDPR GRY+ ++RG + ++V + +I+++ + FV+W
Sbjct: 291 SVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDW 350
Query: 190 IPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLH 345
P K +C PP+ + A + N+T+I E + R+ +F M+ ++AF+H
Sbjct: 351 CPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVH 410
Query: 346 WYTGEGMDEMELTEAESNMNDLVSEYQQ 429
WY GEGM+E E +EA ++ L +Y++
Sbjct: 411 WYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 68.1 bits (159), Expect = 6e-13
Identities = 38/146 (26%), Positives = 79/146 (54%), Gaps = 7/146 (4%)
Frame = +1
Query: 10 TVPELTQQMFDAKNMMAACDP-RHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVE 186
TV ++ +++ KN M + +P + ++++ I +G +V + +L I+ + + F+
Sbjct: 291 TVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIP 350
Query: 187 WIPNNVKTAVCDIPP---RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 357
W P +++ A+ P +++ + N T+I LFKR +Q+ + +R AFL Y
Sbjct: 351 WGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKK 410
Query: 358 EGMDEMELTEAESNMN---DLVSEYQ 426
E + E +L E +S+ + DL++EY+
Sbjct: 411 EAIFEDDLNEFDSSRDVVADLINEYE 436
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.64
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 265 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 372
NS+ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 103 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG--NSTA 276
++ + ++ + + ++NI+ N S W+PN + +P G K++ I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 277 IQELFK 294
+EL++
Sbjct: 403 KEELYE 408
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.2 bits (55), Expect = 2.6
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 259 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMELTEAESNMNDLVSEYQQYQ 435
+ N + L+K + E+F+ +F RK L WY G+ E + N+N SE + Q
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSELSRLQ 1756
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 26.2 bits (55), Expect = 2.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 180 EVRRVLVLDVKHLLIDFLHRHTTAEDGCDGEVAAV 76
+V +V D + LL + HR T D DG+ A V
Sbjct: 80 QVSHKIVTDARLLLCNMTHRGATGADTRDGDGAGV 114
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 82 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 207
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +1
Query: 82 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 198
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 7.8
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 142 QMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG 264
++ +I+ K S++ E +P + TAV P GL +A TF+G
Sbjct: 375 RLWSIKEKAVSFWNE-LPELI-TAVAFSPDGGLAIAGTFVG 413
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 231 PRTKDGSNLHRQLDRYPGAVQ 293
P +KDG+ +HR+L AVQ
Sbjct: 102 PSSKDGAKVHRELRNAINAVQ 122
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 7.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -3
Query: 144 LLIDFLHRHTTAEDGCDGEVAAVTRVTRRHHVLSVEHLLRELGDGAS 4
LL+D + A++ C +A V R H L + + E G GAS
Sbjct: 360 LLVDATNEMKIAQEECFAPIALVFRAKSPEHALEIAN-GTEFGLGAS 405
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -3
Query: 291 EQLLDSGRVADEGCCHL*SAGRDVAHGSLHVVWDPFHEVRRVLVLDV 151
+ +L+ ++ +G C+ + R A+ S + FHE +V + D+
Sbjct: 171 DPILEHKSISTKGACNRVRSARRPANSSKESLLASFHETGKVHIWDI 217
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 349 YTGEGMDEMELTEAESNMNDLVSEYQQYQ 435
Y G G D +L +S +ND++S +++Q
Sbjct: 10 YDGSGDDLNKLDSLKSVLNDVLSSLERFQ 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,463,691
Number of Sequences: 5004
Number of extensions: 26385
Number of successful extensions: 100
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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