Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_E09
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0193 + 26279105-26279229,26279725-26279833,26280362-262804... 30 0.97
06_03_1248 + 28685911-28687719 29 1.7
01_01_1092 - 8593414-8593776,8597750-8597931,8598080-8598152 29 1.7
01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942 29 1.7
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 29 2.3
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 29 2.3
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749... 28 3.9
09_06_0140 + 21090686-21091645,21092142-21092221,21092705-210929... 27 6.9
01_06_1172 - 35115248-35115874 27 6.9
01_01_1121 + 8893177-8893199,8893260-8893287,8893656-8893730,889... 27 6.9
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283... 27 6.9
02_02_0374 + 9538478-9540385 27 9.1
01_01_0363 + 2850954-2853675,2853819-2854225 27 9.1
>05_06_0193 +
26279105-26279229,26279725-26279833,26280362-26280437,
26280527-26281472,26281564-26281615,26281945-26282067,
26282144-26282219,26282308-26282492,26282615-26282806,
26282895-26282963,26283745-26283954,26285602-26285751,
26286283-26286344,26286428-26286503,26286575-26286745
Length = 873
Score = 29.9 bits (64), Expect = 0.97
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 404 LCNTELLHNSIQV-RNAILQLHVKFFQSIYETDFSVAEHILSNR*GSLWCRMLL 246
+CN E+ H+ I++ N+I + H + + ET+ EH S+ LW R+ L
Sbjct: 309 VCNHEM-HSQIELYENSIAEFHDILSKLVEETEKRSLEHSASSMPSELWSRISL 361
>06_03_1248 + 28685911-28687719
Length = 602
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = -1
Query: 436 PTVSSTIHSNSSATLSFSITLSKS 365
PTVSS++HS+SS++ S S LS S
Sbjct: 53 PTVSSSLHSSSSSSPSSSSLLSSS 76
>01_01_1092 - 8593414-8593776,8597750-8597931,8598080-8598152
Length = 205
Score = 29.1 bits (62), Expect = 1.7
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = -1
Query: 283 PTGRGLSGVGCSSHRPTSSSVTDLPSRYNSTMDISPAAINCTLKIVAPSAANSLNFISDL 104
PT + +G S+ P++SS+TDLP I+P +N + VAP +++ SDL
Sbjct: 103 PTCKFDHPMGTLSYSPSASSITDLP--------IAPYPLNYAVAPVAPPSSS-----SDL 149
Query: 103 RDHEFMSRGF 74
R +++ F
Sbjct: 150 RPEYLLTKEF 159
>01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942
Length = 1020
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -1
Query: 271 GLSGVGCSSHRPTSSSVTDLPSRYNSTMDISPAAINCT 158
G GV CS PT + DLPS N T + PA N T
Sbjct: 56 GWEGVTCSHRWPTRVAALDLPSS-NLTGTLPPAVGNLT 92
>06_03_0968 - 26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = -1
Query: 235 TSSSVTDLPSRYNSTMDISPAAINCTLKIVAPSAANSLNFISDLRDHEFMSR 80
+++ + D+ S +S D + + + + K + P A+ +N+ISD +H+ + R
Sbjct: 1004 SNNGILDMNSS-SSQRDAASSTMMASEKGIGPKTADQVNYISDALEHDGLRR 1054
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 228 ELVGLCEE----HPTPERPLPVGQDMFSNGKVCFVNTLEEFYVQLENCVSDLDRVMEKL 392
+LVG+ E+ HP + L +D+ + C V T EF++Q E V DLD ++L
Sbjct: 384 DLVGVMEKYADSHPEWKETL---EDLLILARSCCVMTPGEFWLQCEGIVQDLDDHRQEL 439
>01_06_0129 -
26770543-26770720,26774592-26774719,26774829-26774933,
26775661-26775788,26777332-26777433,26778760-26778861,
26779777-26779852,26779971-26780059,26780177-26780230,
26780482-26780614,26780671-26780797,26781590-26781648
Length = 426
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 195 ELYLEGKSVTEELVGLCEEHPTPERPLPVGQDMF 296
EL + K + +EL L ++ PT PVG+DMF
Sbjct: 222 ELGMASKRIQKELKDLQKDPPTSCSAGPVGEDMF 255
>09_06_0140 +
21090686-21091645,21092142-21092221,21092705-21092906,
21093052-21093327,21093414-21093482,21093638-21093785,
21094080-21094228,21094897-21095061,21095623-21095732,
21095868-21095946,21095947-21096240
Length = 843
Score = 27.1 bits (57), Expect = 6.9
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 198 LYLEGKSVTEELVGLCEEHPTPERPLPVGQDM 293
+Y+ G SV ++ V L E P+P RPLP G D+
Sbjct: 257 IYIVGWSVYDK-VRLVRE-PSPSRPLPEGGDL 286
>01_06_1172 - 35115248-35115874
Length = 208
Score = 27.1 bits (57), Expect = 6.9
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 289 SCPTGRGLSGVGCSS-HRPTSSSVTDLPSRYNSTMDISPAAINCTLKI 149
SCPT RG G ++ H+PT+++ R S +D +PAA T+ I
Sbjct: 161 SCPTCRGSVLHGATTKHKPTAAAAAAGSRRPGSEVD-APAAAAVTVVI 207
>01_01_1121 +
8893177-8893199,8893260-8893287,8893656-8893730,
8894748-8894813,8894917-8894959,8895102-8895150,
8895899-8895992,8896078-8896130,8896921-8897005,
8897242-8897344,8897421-8897513,8897985-8898051,
8898309-8898375,8898463-8898516,8898632-8898766
Length = 344
Score = 27.1 bits (57), Expect = 6.9
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Frame = +3
Query: 12 CVVYRDEL--KIKPALSRKCALQKPRDINSWS-----RKSEIKFNELAAEGATIFNVQFI 170
C + DEL ++ L+ C PR ++ R SE+ +N L G + +F
Sbjct: 85 CSISYDELMCRVTVELAIPCPKSGPRVFKGFTVGFHPRSSELVYNGLTQLGFEQSHHEFS 144
Query: 171 AAGDISIVELYLEGKSVTEELVGLCEEHPTPERPLPV 281
G+ S V LYL LVG P + L V
Sbjct: 145 FQGEQSHVSLYLSAVFSLSGLVGKPSLKVNPVKGLDV 181
>01_01_0359 +
2829325-2832076,2832223-2832593,2833335-2833695,
2833799-2833868,2834021-2834108,2834325-2834580,
2834758-2834883,2835217-2835425
Length = 1410
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = -1
Query: 262 GVGCSSHRPTSSSVTDLPSRYNSTMDISPAAINCT 158
GV CS RPT + LPS N +SPA N T
Sbjct: 61 GVTCSRRRPTRVASLSLPSS-NLAGTLSPAIGNLT 94
>02_02_0374 + 9538478-9540385
Length = 635
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +3
Query: 3 HDDCVVYRDELKIKPAL-SRKCA 68
HD C+V +D K+ P + S KC+
Sbjct: 107 HDPCIVTKDSSKVTPTMCSMKCS 129
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -1
Query: 262 GVGCSSHRPTSSSVTDLPSRYNSTMDISPAAINCT 158
GV CS HRPT LPS N + PA N T
Sbjct: 51 GVKCSRHRPTRVVGLSLPSS-NLAGTLPPAIGNLT 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,149,802
Number of Sequences: 37544
Number of extensions: 249815
Number of successful extensions: 789
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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