Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E09
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   0.16 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.22 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.22 
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    23   2.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   4.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.6  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   6.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   8.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = +3

Query: 234 VGLCEEHPTPERPLP-VGQDMFSNGKVCFVN-----TLEEFYV-QLENCVSDLDRVMEKL 392
           V  C E P P  PLP    D+F      +V+     T E+  V ++E  + D   + +  
Sbjct: 467 VAPCFEEPLPSLPLPGADDDLFGPASPAYVHEDVSPTFEKPLVREIEKTIDDARFIAQHA 526

Query: 393 SVAEEFECIVE 425
              ++FE + E
Sbjct: 527 KNKDKFESVEE 537


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 205 RYNSTMDISPAAINCTLKIVAPSAANSLNF 116
           R+NS   I+PA I+C L IVA  A   L F
Sbjct: 510 RWNSAFAIAPAVISC-LGIVATMAVACLLF 538


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.8 bits (54), Expect = 0.22
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 205 RYNSTMDISPAAINCTLKIVAPSAANSLNF 116
           R+NS   I+PA I+C L IVA  A   L F
Sbjct: 600 RWNSAFAIAPAVISC-LGIVATMAVACLLF 628


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 306 KVCFVNTLEEFYVQLENCVSDLDRV 380
           +V  ++T   F VQL +C   +DR+
Sbjct: 36  RVLALSTKPPFLVQLHSCFQTMDRL 60


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
 Frame = +1

Query: 364 LTWIELWRSSV--LQRNLNVS 420
           L W E+WR S+    R LN +
Sbjct: 29  LRWFEIWRDSLPTKMRELNAT 49


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 201  YLEGKSVTEELVGLCEEHP-TPERPLPVGQDMFSN-GKVCFVN-TLEEFYVQLE 353
            +LEG  VT EL+   + HP T    L    +   N  +   VN  L + Y+ LE
Sbjct: 999  WLEGVHVTPELIYEYQIHPKTLNEVLQADMNALKNFNQPLLVNDQLGQLYLDLE 1052


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -1

Query: 304 PLLNISCPTGRGLSGVGCSSHRPTSSSVTDLPSRYN 197
           PLL+ +CP G  L   G       S+++       N
Sbjct: 58  PLLSCACPDGLKLLSDGLMCVEKVSTTIVPTTQEIN 93


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 436 PTVSSTIHSNSSATLS 389
           PT SS  HS SSA+ S
Sbjct: 64  PTGSSPQHSGSSASTS 79


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 241 RPTSSSVTDLPSRYNSTMDISPAAINCTLKIVAPSAANS 125
           +PTS++ +  PS      +I+ A      K+ APS+  S
Sbjct: 89  QPTSTTTSVTPSCRRQRYNIAAANPLLAEKLAAPSSQAS 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,028
Number of Sequences: 438
Number of extensions: 2518
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)