Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E08
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0677 + 10343089-10343604,10344316-10344462,10344539-103446...   140   5e-34
07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239...   139   1e-33
09_06_0292 + 22075647-22075691,22077394-22077507,22077602-220778...    27   7.2  
01_06_0960 - 33376012-33376433,33376566-33376731,33376848-333770...    27   9.5  

>03_02_0677 +
           10343089-10343604,10344316-10344462,10344539-10344643,
           10345411-10345509,10345662-10345814
          Length = 339

 Score =  140 bits (339), Expect = 5e-34
 Identities = 66/119 (55%), Positives = 85/119 (71%), Gaps = 1/119 (0%)
 Frame = +3

Query: 87  MP-LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXN 263
           MP L CR Y+ ++PEV+  VM+ V+ IA+MGAYV LLEYNNIEGM              +
Sbjct: 1   MPNLECRMYEPRFPEVDAAVMIQVKHIADMGAYVSLLEYNNIEGMILFSELSRRRIRSIS 60

Query: 264 KLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELL 440
            LI+VG+ EP +V+RVD++KGYIDLSKRRVS E+   C +RY K+K V+SI+RHVAE L
Sbjct: 61  SLIKVGRQEPAIVLRVDRDKGYIDLSKRRVSEEEAHACEDRYNKSKLVHSIMRHVAETL 119


>07_03_1773 -
           29422660-29422806,29423103-29423201,29423811-29423915,
           29423990-29424136,29424436-29424954
          Length = 338

 Score =  139 bits (336), Expect = 1e-33
 Identities = 67/122 (54%), Positives = 84/122 (68%), Gaps = 1/122 (0%)
 Frame = +3

Query: 87  MP-LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXN 263
           MP L CR Y+  +PEVE  VM+ V+ +AE+GAYV LLEYNNIEGM               
Sbjct: 1   MPNLECRMYEAPFPEVETAVMIQVKHLAELGAYVSLLEYNNIEGMILYSELSRRRIRSIP 60

Query: 264 KLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHVAELLH 443
            LI+VG+ EP VV+RVD +KGYIDLSKRRVS  D   C +RY+K+K V+SI+RH+AE LH
Sbjct: 61  SLIKVGRQEPAVVLRVDHDKGYIDLSKRRVSHHDRRTCEDRYSKSKFVHSIMRHLAETLH 120

Query: 444 YE 449
            +
Sbjct: 121 LD 122


>09_06_0292 +
           22075647-22075691,22077394-22077507,22077602-22077841,
           22077926-22078003,22078094-22078162,22078420-22078545,
           22079108-22079188,22079272-22079460,22079597-22080434,
           22082290-22082411,22082482-22082701,22082910-22083055,
           22083260-22083566,22083886-22084136,22084294-22084533,
           22084930-22085238
          Length = 1124

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 306 RVDKEKGYIDLSKRRVSAEDIDKCTERYAKAKAVNSILRHV 428
           R +K K  + +S R ++  D ++  +  AKA+A +S+LR V
Sbjct: 340 RANKSKKPVKISARSLAKLDRNEVMKAAAKARASSSVLRPV 380


>01_06_0960 -
           33376012-33376433,33376566-33376731,33376848-33377033,
           33377206-33377442
          Length = 336

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 93  LSCRFYQEKYPEVEDVVMVNVRSIAE 170
           L+  FY E  P+ ED+V+  +R I +
Sbjct: 34  LAIGFYHETCPQAEDLVLAEMREIVQ 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,428,531
Number of Sequences: 37544
Number of extensions: 173237
Number of successful extensions: 390
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)