Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E06
         (438 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P06754 Cluster: Tropomyosin-1, isoforms 9A/A/B; n=38; B...    64   1e-09
UniRef50_Q9ZE64 Cluster: Putative uncharacterized protein RP083;...    31   8.1  

>UniRef50_P06754 Cluster: Tropomyosin-1, isoforms 9A/A/B; n=38;
           Bilateria|Rep: Tropomyosin-1, isoforms 9A/A/B -
           Drosophila melanogaster (Fruit fly)
          Length = 339

 Score = 64.1 bits (149), Expect = 1e-09
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = +2

Query: 329 QKCIKMTTNMQQGTILDVLKKKMRQTKEEMEKYKDE 436
           +K  KMTT++ QGT+LDVLKKKMRQTKEEMEKYKDE
Sbjct: 82  KKTTKMTTSIPQGTLLDVLKKKMRQTKEEMEKYKDE 117


>UniRef50_Q9ZE64 Cluster: Putative uncharacterized protein RP083;
           n=2; Rickettsia|Rep: Putative uncharacterized protein
           RP083 - Rickettsia prowazekii
          Length = 521

 Score = 31.5 bits (68), Expect = 8.1
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 329 QKCIKMTTNMQQGTILDVLKKKMRQTKEEMEKYKDE 436
           +KC++ TT  QQG ILDVL    R  K  + K + E
Sbjct: 142 EKCLEETTPEQQGMILDVLTNNTRIRKALITKIERE 177


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 374,533,644
Number of Sequences: 1657284
Number of extensions: 6738705
Number of successful extensions: 12944
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12942
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21918499148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)