Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E06
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    26   2.9  
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   2.9  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   3.9  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   6.7  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    24   8.9  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    24   8.9  

>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 147 FVNTKLSVKFGGGHFIRRLCSFVPSPSQHYGAIT 248
           F +   +V +G   ++RR+ S VP+  ++ G  T
Sbjct: 297 FSSINANVPYGRNEYLRRVTSLVPNQPEYTGPYT 330


>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -1

Query: 363 CCMLVVIFMHF 331
           CC+L+V+F+HF
Sbjct: 153 CCILIVLFLHF 163


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 359  QQGTILDVLKKKMRQTKEEMEKYK 430
            +QGTI D   + MRQ +E++   K
Sbjct: 951  KQGTIFDFHSQNMRQCREQLHNLK 974


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +2

Query: 350 TNMQQGTILDVLKKKMRQTKEE---MEKYKDE 436
           T   Q  +LD L++K+RQ + E   +E+ KDE
Sbjct: 408 TRESQPEVLDNLERKLRQLRVEIRALEREKDE 439


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = -2

Query: 293 YTFAL-LAKMPTDCPARYCPVMLRWARHE*TQPANKMAATELNAQFCIYK 147
           Y F + L  +P   P  Y PV+LRW      +   +   T    Q   +K
Sbjct: 266 YMFVMYLTLLPV--PETYAPVLLRWRAQRIRKETGRQVFTAQEKQMLSFK 313


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 350 SSFLCTFVFKFTS*TLKTKYTFALLA 273
           ++++CT    F S   KT++TF L A
Sbjct: 52  NAYICTSFLCFHSDDFKTRFTFPLAA 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,423
Number of Sequences: 5004
Number of extensions: 28664
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)