Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E06
         (438 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1991|AAF55163.2|  339|Drosophila melanogaster CG4898-PB...    64   8e-11
J03502-1|AAA28972.1|  252|Drosophila melanogaster protein ( D.me...    60   1e-09
AY060414-1|AAL25453.1|  252|Drosophila melanogaster LD37158p pro...    60   1e-09
AE014297-2001|AAF55164.2|  252|Drosophila melanogaster CG4898-PA...    60   1e-09

>AE014297-1991|AAF55163.2|  339|Drosophila melanogaster CG4898-PB,
           isoform B protein.
          Length = 339

 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = +2

Query: 329 QKCIKMTTNMQQGTILDVLKKKMRQTKEEMEKYKDE 436
           +K  KMTT++ QGT+LDVLKKKMRQTKEEMEKYKDE
Sbjct: 82  KKTTKMTTSIPQGTLLDVLKKKMRQTKEEMEKYKDE 117


>J03502-1|AAA28972.1|  252|Drosophila melanogaster protein (
           D.melanogaster tropomyosinII non-muscle isoform mRNA,
           complete cds. ).
          Length = 252

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 27/31 (87%), Positives = 29/31 (93%)
 Frame = +2

Query: 344 MTTNMQQGTILDVLKKKMRQTKEEMEKYKDE 436
           MTT + QGT+LDVLKKKMRQTKEEMEKYKDE
Sbjct: 1   MTTRLPQGTLLDVLKKKMRQTKEEMEKYKDE 31


>AY060414-1|AAL25453.1|  252|Drosophila melanogaster LD37158p
           protein.
          Length = 252

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 27/31 (87%), Positives = 30/31 (96%)
 Frame = +2

Query: 344 MTTNMQQGTILDVLKKKMRQTKEEMEKYKDE 436
           MTT++ QGT+LDVLKKKMRQTKEEMEKYKDE
Sbjct: 1   MTTSIPQGTLLDVLKKKMRQTKEEMEKYKDE 31


>AE014297-2001|AAF55164.2|  252|Drosophila melanogaster CG4898-PA,
           isoform A protein.
          Length = 252

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 27/31 (87%), Positives = 30/31 (96%)
 Frame = +2

Query: 344 MTTNMQQGTILDVLKKKMRQTKEEMEKYKDE 436
           MTT++ QGT+LDVLKKKMRQTKEEMEKYKDE
Sbjct: 1   MTTSIPQGTLLDVLKKKMRQTKEEMEKYKDE 31


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,300,690
Number of Sequences: 53049
Number of extensions: 330601
Number of successful extensions: 551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1396986582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)