Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E06
         (438 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D38542-1|BAA07545.1|  256|Caenorhabditis elegans CeTMIII protein.      40   0.001
D38539-3|BAA07542.1|  256|Caenorhabditis elegans CeTMIII protein.      40   0.001
AL132877-5|CAD45604.1|  256|Caenorhabditis elegans Hypothetical ...    40   0.001
AL132877-3|CAC70115.1|  256|Caenorhabditis elegans Hypothetical ...    40   0.001
AF298180-1|AAG10302.1|  256|Caenorhabditis elegans tropomyosin i...    40   0.001

>D38542-1|BAA07545.1|  256|Caenorhabditis elegans CeTMIII protein.
          Length = 256

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +2

Query: 359 QQGTILDVLKKKMRQTKEEMEKYKDE 436
           QQ ++LDVLKKKMRQ +EE E  KDE
Sbjct: 10  QQTSLLDVLKKKMRQAREEAEAAKDE 35


>D38539-3|BAA07542.1|  256|Caenorhabditis elegans CeTMIII protein.
          Length = 256

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +2

Query: 359 QQGTILDVLKKKMRQTKEEMEKYKDE 436
           QQ ++LDVLKKKMRQ +EE E  KDE
Sbjct: 10  QQTSLLDVLKKKMRQAREEAEAAKDE 35


>AL132877-5|CAD45604.1|  256|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1e protein.
          Length = 256

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +2

Query: 359 QQGTILDVLKKKMRQTKEEMEKYKDE 436
           QQ ++LDVLKKKMRQ +EE E  KDE
Sbjct: 10  QQTSLLDVLKKKMRQAREEAEAAKDE 35


>AL132877-3|CAC70115.1|  256|Caenorhabditis elegans Hypothetical
           protein Y105E8B.1c protein.
          Length = 256

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +2

Query: 359 QQGTILDVLKKKMRQTKEEMEKYKDE 436
           QQ ++LDVLKKKMRQ +EE E  KDE
Sbjct: 10  QQTSLLDVLKKKMRQAREEAEAAKDE 35


>AF298180-1|AAG10302.1|  256|Caenorhabditis elegans tropomyosin
           isoform IV protein.
          Length = 256

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +2

Query: 359 QQGTILDVLKKKMRQTKEEMEKYKDE 436
           QQ ++LDVLKKKMRQ +EE E  KDE
Sbjct: 10  QQTSLLDVLKKKMRQAREEAEAAKDE 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,902,728
Number of Sequences: 27780
Number of extensions: 167189
Number of successful extensions: 383
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)