Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E05
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.13 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   3.6  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   3.6  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   6.2  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    24   8.2  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    24   8.2  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    24   8.2  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +1

Query: 49  SLGGHTPRTWPSRSTVLXXXXXXXXXXSTTSCYRYSPTF---STHPYTYSSSTVTQPYWA 219
           SL   T  + PS S+            ST+S Y  S +    S+ P + SSST+T    +
Sbjct: 177 SLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLS 236

Query: 220 PPFAPQTSGAPAQASN 267
               P TS + +  S+
Sbjct: 237 TSSIPSTSSSSSSTSS 252


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +3

Query: 267 LPASEPSVTPVATPYPDHD-NIYTPMLAR-------YRKIIENIPK 380
           LP S PS TP   PY     N Y  +LA+       ++ I +N PK
Sbjct: 652 LPTSIPSYTPATHPYAGPAINAYAKLLAKDANNKTNFQAIFDNNPK 697


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 163 TSENICNSSLLTLAPPVAIRREEP 92
           + E IC++ LLT+AP + + R  P
Sbjct: 199 SGEVICDAPLLTVAPTLGLNRIHP 222


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 151 YSPTFSTHPYTYSSSTVTQPYWAP 222
           Y+P +      YSS  V+QP W P
Sbjct: 596 YNPGYPYMDPNYSSGYVSQPPWQP 619


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 148 RYSPTFSTHPYTYSSSTVTQPY 213
           R   TFS  P   SS TV +PY
Sbjct: 162 RMMATFSVAPAPKSSDTVVEPY 183


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 151 YSPTFS-THPYTYSSSTVTQPYWAPPFAPQTSGAPAQASNY 270
           Y+P    T P    +ST +    +PP AP T+   A   N+
Sbjct: 260 YNPVSRLTQPLPSLASTASPQQVSPPAAPSTTSGEAIPENF 300


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 148 RYSPTFSTHPYTYSSSTVTQPYWAPP 225
           ++ PT+  + Y   +    QP W PP
Sbjct: 17  QWDPTYQAYFYINETFEGAQPQWEPP 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,410
Number of Sequences: 5004
Number of extensions: 25392
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)