Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_E05
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1447 + 26587436-26587497,26588479-26589130,26589247-265893... 52 2e-07
12_02_1225 - 27164595-27164842,27164959-27165133,27165213-271653... 50 7e-07
04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922... 31 0.49
01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406... 28 2.6
03_06_0301 - 32974276-32974638,32974842-32974967,32975056-329751... 28 3.5
02_03_0231 - 16636377-16636403,16636590-16636645,16636793-166368... 28 3.5
04_04_1275 + 32321161-32321285,32321849-32322071,32322187-323223... 27 4.6
06_02_0085 + 11555539-11555632,11555767-11555867,11556947-115570... 27 6.0
10_08_0076 + 14685364-14686468,14686521-14686540,14686614-146867... 27 8.0
07_03_1466 - 26731417-26731843,26733341-26733573 27 8.0
>07_03_1447 +
26587436-26587497,26588479-26589130,26589247-26589335,
26589794-26589858,26589967-26590022,26590107-26590227,
26590316-26590390,26590689-26590742,26590830-26590924,
26591004-26591178,26591293-26591537
Length = 562
Score = 51.6 bits (118), Expect = 2e-07
Identities = 24/59 (40%), Positives = 36/59 (61%)
Frame = +3
Query: 18 EARALLEGQALARRAHAEDMAFKIDGSSRLIATGGASVNNELLQIFSDVFNAPVYVLKQ 194
E RA++EGQ L+ R HAE + R+IATGGAS N +L + +F PV+ +++
Sbjct: 423 EVRAIIEGQLLSMRGHAERFGMP-NPPKRIIATGGASSNERILHSIAQIFGCPVFTVQR 480
>12_02_1225 -
27164595-27164842,27164959-27165133,27165213-27165307,
27165391-27165444,27165794-27165868,27165961-27166081,
27166494-27166549,27166698-27166762,27166962-27167050,
27167155-27167812,27168182-27168202,27168777-27168859,
27169081-27169136,27169413-27169619,27170628-27170760
Length = 711
Score = 50.0 bits (114), Expect = 7e-07
Identities = 24/59 (40%), Positives = 36/59 (61%)
Frame = +3
Query: 18 EARALLEGQALARRAHAEDMAFKIDGSSRLIATGGASVNNELLQIFSDVFNAPVYVLKQ 194
E RA++EGQ L+ R HAE + R+IATGGAS N +L+ + +F VY +++
Sbjct: 571 EVRAIIEGQFLSMRGHAERCGLPVP-PKRIIATGGASSNQIILKTMASIFGCSVYTVQR 628
>04_04_1370 -
32990002-32990244,32990950-32991943,32992019-32992240,
32993413-32993543
Length = 529
Score = 30.7 bits (66), Expect = 0.49
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 90 DGSSRLIATGGASVNNELLQIFSDVFNAPV 179
+G L GGA+VNN L+QI +D+ +PV
Sbjct: 428 EGEFLLRVDGGATVNNLLMQIQADLLGSPV 457
>01_06_0362 +
28739969-28740232,28740336-28740452,28740560-28740660,
28741251-28741322,28741433-28741514,28741607-28741687,
28742548-28742589,28743009-28743047,28743278-28743343,
28743444-28743590,28743638-28743652
Length = 341
Score = 28.3 bits (60), Expect = 2.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 202 TQPYWAPPFAPQTSGAPAQAS 264
TQP APP AP SG PA+ +
Sbjct: 48 TQPLPAPPSAPPPSGGPARVA 68
>03_06_0301 -
32974276-32974638,32974842-32974967,32975056-32975131,
32975935-32976130,32976666-32976759,32977773-32978195
Length = 425
Score = 27.9 bits (59), Expect = 3.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 184 YSSSTVTQPYWAPPFAPQTSGAPAQ 258
+S ++ P+W PP PQ++ A Q
Sbjct: 5 FSVEEISDPFWVPPPPPQSAAAAQQ 29
>02_03_0231 -
16636377-16636403,16636590-16636645,16636793-16636853,
16637590-16637649,16638007-16638096,16638775-16638906,
16639016-16639293,16639916-16639949,16640036-16640105,
16641170-16641282,16641654-16641836,16642106-16642283,
16642958-16643142,16643347-16643477,16643620-16643772,
16643849-16643995,16644662-16644737
Length = 657
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 133 TTSCYRYSPTFSTHPYTYSSSTVTQPYWAPPFAPQTSGAP 252
+TS P S PY Y+++ T P P F P G P
Sbjct: 530 STSVRPPQPPASDGPYYYANNMPTAPLGPPMFPPAYGGQP 569
>04_04_1275 +
32321161-32321285,32321849-32322071,32322187-32322309,
32322391-32322519,32322939-32323024,32323233-32323356,
32323531-32323579,32323808-32323890,32323975-32324042,
32324187-32324264,32324460-32324547,32324640-32324756,
32324844-32325176
Length = 541
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 57 RAHAEDMAFKIDGSSRLIATGGASVNNELLQIFSDV 164
+++ + +AF+I + RLI GG + LL + SD+
Sbjct: 140 KSNGDPIAFQIQSNLRLIVAGGDGTASWLLGVVSDL 175
>06_02_0085 +
11555539-11555632,11555767-11555867,11556947-11557056,
11557152-11557227,11557412-11557555,11558432-11558503,
11558601-11559470
Length = 488
Score = 27.1 bits (57), Expect = 6.0
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Frame = +1
Query: 136 TSCYRYSPTFSTHP----YTYSSSTVTQPYWAPPFAPQTS 243
TS YSP+ S HP Y S+ T T P AP S
Sbjct: 393 TSAVSYSPSGSNHPAPTQYHPSADTTTHQVTPPAIAPPAS 432
>10_08_0076 +
14685364-14686468,14686521-14686540,14686614-14686749,
14687537-14687664,14687742-14687855
Length = 500
Score = 26.6 bits (56), Expect = 8.0
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1
Query: 349 GIERLSRTYPSCSRALYLII 408
G+E LSR+YPS + L++++
Sbjct: 343 GLEHLSRSYPSLMKELFVVM 362
>07_03_1466 - 26731417-26731843,26733341-26733573
Length = 219
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 77 HVLGVCPPSERLPLQQRSGFELGLG 3
H+L CPP +R+ ++RSG E G G
Sbjct: 120 HILSRCPPRDRV-TERRSGGERGGG 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,555,543
Number of Sequences: 37544
Number of extensions: 187374
Number of successful extensions: 771
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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