Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E05
         (418 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB015046-1|BAA31527.1|  527|Homo sapiens xylulokinase protein.         74   2e-13
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest...    32   0.88 
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest...    32   0.88 
AY033891-1|AAK55765.1|  190|Homo sapiens polyamine oxidase isofo...    29   4.7  
AL121675-3|CAM28308.1|  190|Homo sapiens spermine oxidase protein.     29   4.7  
AK127409-1|BAC86964.1|  476|Homo sapiens protein ( Homo sapiens ...    29   6.2  

>AB015046-1|BAA31527.1|  527|Homo sapiens xylulokinase protein.
          Length = 527

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 30/57 (52%), Positives = 46/57 (80%)
 Frame = +3

Query: 18  EARALLEGQALARRAHAEDMAFKIDGSSRLIATGGASVNNELLQIFSDVFNAPVYVL 188
           E RAL+EGQ +A+R HAE + +++   ++++ATGGAS N E+LQ+ +DVF+APVYV+
Sbjct: 410 EVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVI 466


>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 31.9 bits (69), Expect = 0.88
 Identities = 26/85 (30%), Positives = 37/85 (43%)
 Frame = +1

Query: 1    APRPSSKPERCWRGRRSLGGHTPRTWPSRSTVLXXXXXXXXXXSTTSCYRYSPTFSTHPY 180
            A  PS  P       RS GG+TP++ PS S             S TS   YSPT  ++  
Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQS-PSYSPTSPSYSPTSPSYSPTSP-NYSPTSPSYSP 1645

Query: 181  TYSSSTVTQPYWAPPFAPQTSGAPA 255
            T  S + T P ++P     +  +P+
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPTSPS 1670


>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 31.9 bits (69), Expect = 0.88
 Identities = 26/85 (30%), Positives = 37/85 (43%)
 Frame = +1

Query: 1    APRPSSKPERCWRGRRSLGGHTPRTWPSRSTVLXXXXXXXXXXSTTSCYRYSPTFSTHPY 180
            A  PS  P       RS GG+TP++ PS S             S TS   YSPT  ++  
Sbjct: 1588 AMSPSYSPTSPAYEPRSPGGYTPQS-PSYSPTSPSYSPTSPSYSPTSP-NYSPTSPSYSP 1645

Query: 181  TYSSSTVTQPYWAPPFAPQTSGAPA 255
            T  S + T P ++P     +  +P+
Sbjct: 1646 TSPSYSPTSPSYSPTSPSYSPTSPS 1670


>AY033891-1|AAK55765.1|  190|Homo sapiens polyamine oxidase
           isoform-3 protein.
          Length = 190

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 18  EARALLEGQALARRAHAEDMAFKIDGSSRLIATGGASVNNELLQIFSDVFNAPVYVL 188
           EA  LLE      R+      +  +G +  +   G  +  ++++ FSD++N P+ VL
Sbjct: 94  EANGLLEETTDGERSVGRISLYSKNGVACYLTNHGRRIPKDVVEEFSDLYNEPMQVL 150


>AL121675-3|CAM28308.1|  190|Homo sapiens spermine oxidase protein.
          Length = 190

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 18  EARALLEGQALARRAHAEDMAFKIDGSSRLIATGGASVNNELLQIFSDVFNAPVYVL 188
           EA  LLE      R+      +  +G +  +   G  +  ++++ FSD++N P+ VL
Sbjct: 94  EANGLLEETTDGERSVGRISLYSKNGVACYLTNHGRRIPKDVVEEFSDLYNEPMQVL 150


>AK127409-1|BAC86964.1|  476|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45501 fis, clone BRTHA2019726, highly  similar
           to Ig gamma-1 chain C region. ).
          Length = 476

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = +3

Query: 57  RAHAEDMAFKIDGSSRLIATGGASVNNELLQIFS-DVFNAPVYVLKQHGNXXXXXXXXXX 233
           +A+    A+      R   +   S N   LQ+ S    +  VY   +HGN          
Sbjct: 73  KANRYATAYAASVKGRFTISRDDSKNTAYLQMNSLKTEDTAVYYCTRHGNDLPGTTALLG 132

Query: 234 XDVWSSSTGIKLPASE---PSVTPVA 302
            DVW   T + + ++    PSV P+A
Sbjct: 133 MDVWGQGTTVTVSSASTKGPSVFPLA 158


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,471,629
Number of Sequences: 237096
Number of extensions: 1014903
Number of successful extensions: 3496
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3483
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)