Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E04
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894...   124   5e-29
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341...   124   5e-29
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892...    99   3e-21
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645...    29   1.9  
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497     28   5.9  
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647...    27   7.7  

>09_04_0677 -
           19388888-19389019,19389124-19389216,19389317-19389445,
           19389559-19389728,19390280-19390481,19390576-19390623,
           19390797-19390799
          Length = 258

 Score =  124 bits (299), Expect = 5e-29
 Identities = 63/127 (49%), Positives = 79/127 (62%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
           LFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK 
Sbjct: 24  LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83

Query: 360 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 539
            A  LFK+L KYRPE                         K+P  ++ G N VT L+E+ 
Sbjct: 84  LATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQS 142

Query: 540 KAQLVVI 560
           KAQLVVI
Sbjct: 143 KAQLVVI 149


>08_02_0211 -
           14333553-14333684,14333795-14333887,14334019-14334105,
           14334220-14334389,14334985-14335186,14335604-14335606
          Length = 228

 Score =  124 bits (299), Expect = 5e-29
 Identities = 63/127 (49%), Positives = 79/127 (62%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
           LFEKR K F IG  + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK 
Sbjct: 8   LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67

Query: 360 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 539
            A  LFK+L KYRPE                         K+P  ++ G N VT L+E+ 
Sbjct: 68  LATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQS 126

Query: 540 KAQLVVI 560
           KAQLVVI
Sbjct: 127 KAQLVVI 133


>01_07_0018 -
           40488702-40488833,40488928-40489020,40489125-40489253,
           40489379-40489500,40490292-40490544,40490636-40490638
          Length = 243

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 56/127 (44%), Positives = 75/127 (59%)
 Frame = +3

Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
           LFEKR K F IG  + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK 
Sbjct: 25  LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84

Query: 360 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXDEPPPKRPNTLRAGTNTVTKLVEKK 539
                 ++L++ + E                         K+P  ++ G + VT L+E+ 
Sbjct: 85  LGCQKERLLKRAQAEAEGKTVEA-----------------KKPIVVKYGLDHVTYLIEQS 127

Query: 540 KAQLVVI 560
           KAQLVVI
Sbjct: 128 KAQLVVI 134


>11_03_0212 -
           11761856-11762037,11762302-11762398,11763571-11764545,
           11766172-11766263,11766450-11766510
          Length = 468

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +3

Query: 201 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 368
           N  +GQD +    ++ +V+   Y  I Q+ + +L  RLK  PP    + TQ + K    K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411

Query: 369 GLFKILEK 392
               +L+K
Sbjct: 412 AAKDVLQK 419


>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
          Length = 369

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 301 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 426
           +++   +R S++      K QP  C+RSW   G+  +Q G++
Sbjct: 74  TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114


>06_03_1228 -
           28563546-28563630,28563897-28564000,28564256-28564759,
           28564854-28564932,28566053-28566130,28566227-28566268,
           28566352-28566449,28566542-28566673,28566757-28566879
          Length = 414

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +2

Query: 224 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 331
           P NQ   P      +Y+H AS G V        ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,925,502
Number of Sequences: 37544
Number of extensions: 254596
Number of successful extensions: 719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)