Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E03
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c...    54   9e-09
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    29   0.29 
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   2.1  
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    26   3.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.3  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    25   6.3  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   8.3  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   8.3  

>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 959

 Score = 54.4 bits (125), Expect = 9e-09
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
 Frame = +2

Query: 41  PYSGSYSNNAV--LDCAYRRLADHARMISVCLADGAFP---ATSLNLKQIMRKSFKISTD 205
           PY+G   +  V  +D AYR +ADH R ++  ++DG  P        L++I+R+  +    
Sbjct: 283 PYTGKMGDEDVDGIDTAYRVVADHVRTLTFAISDGGVPNNEGRGYVLRRILRRGARYVRK 342

Query: 206 VFKSP--NLLDHLYNEVASTLGSTYPELMTKEKEVKLIIEHERQAYSK 343
            F  P  N    L   V   +G  +PEL  K  +V+ +++ E +++S+
Sbjct: 343 KFGVPIGNFFSRLSLTVVEQMGDFFPELKRKVDDVRELLDEEEESFSR 390


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 22/101 (21%), Positives = 43/101 (42%)
 Frame = +2

Query: 191 KISTDVFKSPNLLDHLYNEVASTLGSTYPELMTKEKEVKLIIEHERQAYSKMRAGFAKKW 370
           K+ ++  ++   + + YN V++ +      L    K+V    E      S MR    + W
Sbjct: 245 KLKSNFDRAKWYMGNFYNPVSTAINRVVYSLPRNSKDVYYTDEVGNITTSHMRVEPHQTW 304

Query: 371 RELISRYPEVEVMSDVEFGGFTLGYKEFKETMSKHPNTVIP 493
            EL  RYP     + +    + + Y+EF+ + ++     IP
Sbjct: 305 IELNPRYPVFGGWNYLFQLDWKMPYEEFRSSKNRREYLDIP 345


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 224 LLDHLYNEVASTLGSTYPELMTKEKEVKLIIEHE 325
           L  H+Y ++ STL     E M K +EV LI+E++
Sbjct: 405 LRKHIYKDILSTLRLVMIENMVKPEEV-LIVEND 437


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 399 TSGYRDINSLHFLAKPARILEYACLSCSIINFTSFSLV 286
           T+G +   SL FL  P   + +ACL     +FT FSL+
Sbjct: 114 TNGVKLAQSL-FLLLPFNFIFFACLFFRKASFTDFSLM 150


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 143  FPATSLNLKQIMRKSFKISTDVFKSPNLLDHLYNEVA 253
            FP TSL+++++ R   K    + K   L  H +N+++
Sbjct: 3543 FPVTSLSIEKVDRSLMKSLDFIPKFQTLAGHQHNDLS 3579


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 20/95 (21%), Positives = 40/95 (42%)
 Frame = +2

Query: 20  KNSKGVSPYSGSYSNNAVLDCAYRRLADHARMISVCLADGAFPATSLNLKQIMRKSFKIS 199
           KN K +S YSG   ++A++    ++L    +           P +   L+  + K+  ++
Sbjct: 102 KNGKQISQYSGPRKHDALVKYMRKQLLPTVK-----------PISKDTLENFVEKADDLA 150

Query: 200 TDVFKSPNLLDHLYNEVASTLGSTYPELMTKEKEV 304
              F     L+  Y EVA  +   +    + +KE+
Sbjct: 151 VVAFFKDQKLNDTYTEVAEVMKDDFVFAASDDKEL 185


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 431 SHQIQRHSSPPLQDTEISILSIF*QNPHAF 342
           +H+   HSSPPL + E+ I +IF    H F
Sbjct: 44  THKNDDHSSPPLPEEEMYI-AIFNYIEHLF 72


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 441 PSVKPPNSTSLITSTSGYRDINSLHFLAKP 352
           P V+PPN  ++I S SG  + N       P
Sbjct: 86  PPVQPPNDPAIIGSNSGQYNWNQAQTAQPP 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,914
Number of Sequences: 5004
Number of extensions: 41093
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)