Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_E03
(494 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0770 + 19420249-19420359,19421691-19421763,19421887-194219... 41 5e-04
07_01_1034 - 8962703-8962748,8962831-8962991,8963068-8963905,896... 38 0.003
10_02_0097 + 5283306-5283683,5284618-5284758,5284928-5285074,528... 36 0.014
02_04_0307 - 21905897-21906490,21906581-21906722,21907116-219072... 30 0.89
02_04_0305 - 21873195-21873788,21873878-21874019,21874597-218747... 30 0.89
05_04_0349 + 20492334-20492494,20493245-20493324,20493951-204940... 29 1.6
10_08_0418 - 17779499-17780952,17781177-17782017 27 8.3
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668... 27 8.3
01_06_0678 - 31114259-31114321,31114508-31114552,31114644-311147... 27 8.3
>04_03_0770 +
19420249-19420359,19421691-19421763,19421887-19421964,
19422223-19422284,19422404-19422472,19422672-19422700,
19422784-19422991,19423071-19423301,19424079-19424132,
19425344-19426292,19426853-19426863
Length = 624
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +2
Query: 221 NLLDHLYNEVASTLGSTYPELMTKEKEVKLIIEHERQAYSKMRAGFAKKWRELISRYPEV 400
N ++ N + + S EL E E+K + +H+RQ Y MRA + +K R SR+ +
Sbjct: 107 NYRTNIINTITNPSESLLKELQVVE-EMKELCDHKRQEYEAMRAAYREKGR---SRHSKT 162
Query: 401 EVMSDVEFGGFTLGYKE 451
E +S + + L Y+E
Sbjct: 163 ETLSSEQLQAYFLDYQE 179
>07_01_1034 -
8962703-8962748,8962831-8962991,8963068-8963905,
8963991-8964128,8964206-8964355,8964436-8964683,
8964825-8964953,8965735-8965960,8966909-8966975,
8967488-8967551,8968902-8969000,8969074-8969157,
8969240-8969321,8969412-8969460,8969664-8969769,
8970650-8970734,8970814-8970917,8970994-8971109,
8971187-8971373,8972005-8972113,8972633-8972761,
8973365-8973449,8973812-8973947,8974078-8974230,
8974488-8974634,8974801-8974941,8975580-8975903
Length = 1400
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 35 VSPYSGSYSNNAV--LDCAYRRLADHARMISVCLADGAFPATSLNLKQIMR 181
+ PYSG + + + +D AYR +ADH R S +ADG+ P + + R
Sbjct: 261 IQPYSGKFGPDDINEVDLAYRIVADHIRTSSFAIADGSQPGIEIARNMLRR 311
>10_02_0097 +
5283306-5283683,5284618-5284758,5284928-5285074,
5285226-5285378,5285509-5285644,5285740-5285840
Length = 351
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 32 GVSPYSGSYSNNAV--LDCAYRRLADHARMISVCLADGAFP 148
G+ YSG V +D AYR +ADH R +S +ADG+ P
Sbjct: 278 GIQSYSGKVGPEDVDKVDMAYRVVADHIRTLSFAIADGSQP 318
>02_04_0307 -
21905897-21906490,21906581-21906722,21907116-21907247,
21907303-21907433,21908028-21908185,21908299-21908396,
21908511-21908631,21908748-21908965,21909230-21909429
Length = 597
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +2
Query: 191 KISTDVFKSPNLLDHLYNEVASTLGSTYPELMTKEKEVKL 310
++S +VF+S + HL N +A+T+G ++ T EKE+K+
Sbjct: 451 ELSEEVFRSEEYI-HLMN-LANTIGRLLNDMQTYEKEIKM 488
>02_04_0305 -
21873195-21873788,21873878-21874019,21874597-21874782,
21874911-21875058,21875172-21875269,21875384-21875469,
21875741-21875825,21879298-21879478,21879682-21879874,
21881429-21881566,21881892-21881900
Length = 619
Score = 30.3 bits (65), Expect = 0.89
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +2
Query: 191 KISTDVFKSPNLLDHLYNEVASTLGSTYPELMTKEKEVKL 310
++S +VF+S + HL N +A+T+G ++ T EKE+K+
Sbjct: 473 ELSEEVFRSKEYI-HLMN-LANTIGRLLNDMQTYEKEIKM 510
>05_04_0349 +
20492334-20492494,20493245-20493324,20493951-20494020,
20494089-20494139,20494535-20494649,20495401-20496268,
20496453-20496628,20500217-20500276,20501617-20501694,
20501951-20502008,20502658-20502720,20503397-20503453,
20503599-20503661,20504081-20504454
Length = 757
Score = 29.5 bits (63), Expect = 1.6
Identities = 30/139 (21%), Positives = 59/139 (42%)
Frame = +2
Query: 14 IEKNSKGVSPYSGSYSNNAVLDCAYRRLADHARMISVCLADGAFPATSLNLKQIMRKSFK 193
I ++ + Y G+ V + +R A + V F L + ++ K+
Sbjct: 95 ISRSPRQTMRYRGNRLTTWVREPPSKRCVKQAEFVPVMRQTMGFCNNCLRMAIMIEKNVD 154
Query: 194 ISTDVFKSPNLLDHLYNEVASTLGSTYPELMTKEKEVKLIIEHERQAYSKMRAGFAKKWR 373
+ +D + +D E L Y +++ +EKE L +++ R+AY+ +R+G
Sbjct: 155 VDSDGER----VDFSDRETYEFLFKDYWDII-REKE-GLTLDNMREAYTLLRSGLNCNEL 208
Query: 374 ELISRYPEVEVMSDVEFGG 430
+ + P E SD +F G
Sbjct: 209 SDMEKLPNSEQSSDDDFLG 227
>10_08_0418 - 17779499-17780952,17781177-17782017
Length = 764
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 454 EFLITQCEATKFNVTHHLHFRIPRYQFSP 368
E L+ EA KF V R+PR+ F P
Sbjct: 581 ELLVFDMEARKFEVIQGPPCRLPRFNFGP 609
>04_03_0961 +
21263735-21263773,21264157-21264279,21266774-21266847,
21266939-21267095,21267554-21267694,21267739-21267823,
21268810-21268903,21269041-21269239,21269515-21269549,
21270076-21270631,21270722-21270882,21271704-21271718,
21273078-21273330,21273439-21273562,21273688-21273788,
21274870-21274938,21275060-21275191,21275270-21275404,
21275489-21275551,21275636-21275881,21276007-21276285
Length = 1026
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 230 DHLYNEVASTLGSTYPELMTKEKEVKLIIEHERQAYSKMRAGFAKKWRE 376
+ + NE A+ + S Y E+ I EHER + + A+KW E
Sbjct: 501 EEMKNEAAAEIDSLYDEIRPA------IEEHERDSQDSVATSLAEKWIE 543
>01_06_0678 -
31114259-31114321,31114508-31114552,31114644-31114742,
31114827-31114872,31115026-31115102,31115385-31115432,
31120640-31120708,31120848-31120853,31120955-31121032,
31121246-31121344,31121427-31121489,31122642-31122713,
31122800-31122874,31122965-31123021,31123983-31124186,
31124317-31124394,31124485-31124547,31124646-31125284,
31125367-31125416,31125496-31125576,31125896-31125923
Length = 679
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 97 QPAVSAIQYGIIRVTTTVWRHPFA 26
Q A + G +R T +WRHP A
Sbjct: 613 QKAAKLLDSGAVRATRFLWRHPVA 636
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,578,917
Number of Sequences: 37544
Number of extensions: 263556
Number of successful extensions: 717
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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