Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E03
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97013-4|AAB52339.1|  968|Caenorhabditis elegans Alanyl trna syn...    56   2e-08
Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical p...    44   8e-05
AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA s...    44   8e-05
L23648-9|AAK95877.1|  466|Caenorhabditis elegans Prion-like-(q/n...    31   0.61 
Z69904-5|CAA93778.1|  250|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U20862-5|AAK29861.1|  483|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine rece...    27   9.9  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U97013-4|AAB52339.1|  968|Caenorhabditis elegans Alanyl trna
           synthetase protein 2 protein.
          Length = 968

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
 Frame = +2

Query: 11  AIEKNSKGVSPYSGSYSNNAV--LDCAYRRLADHARMISVCLADGAFPATS---LNLKQI 175
           AI K S GV  Y+G   +     +D AYR +ADH R +++ L+DG  P  S     L++I
Sbjct: 269 AIHKGS-GVRAYTGFIGDEDKDGVDMAYRVVADHVRTLTIALSDGGRPDNSGRGYVLRRI 327

Query: 176 MRKSFKISTDVFKS-PNLLDHLYNEVASTLGSTYPELMTKEKEVKLIIEHERQAYSKMRA 352
           +R+  + +++   + P     L   V S LG T+PEL      V  II  E + + K  +
Sbjct: 328 LRRGVRYASEKLNAQPGFFASLVPVVISILGETFPELSRDPVTVMDIINDEEKQFLKTLS 387

Query: 353 GFAKKWRELISRYPE 397
                ++  +   PE
Sbjct: 388 RGRVLFQRAVQSLPE 402


>Z66521-16|CAA91396.2|  793|Caenorhabditis elegans Hypothetical
           protein W02B12.6a protein.
          Length = 793

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
 Frame = +2

Query: 14  IEKNSK-GVSPYSGSYSNNAVLDCAYRRLADHARMISVCLADGAFP---ATSLNLKQIMR 181
           +EK S+     Y+GS  +    D  +R +ADH R  +V ++DGA P        ++++MR
Sbjct: 277 LEKTSELAKKQYTGSLDSRQ--DATFRLVADHIRAATVAISDGAVPDGTGCGFIVRKMMR 334

Query: 182 KSFKISTDVFKSPN-LLDHLYNEVASTLGSTYPELMTKEKEVKLIIEHERQAYSK 343
           ++F             +  L   VAST+   YPE+      ++ I   E   + K
Sbjct: 335 RAFLQGISKLGIERYAMSELVPVVASTMKEVYPEIHDTSTHIRKIFNDEEAQFWK 389


>AF188715-1|AAF05590.1|  793|Caenorhabditis elegans alanyl-tRNA
           synthetase protein.
          Length = 793

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%)
 Frame = +2

Query: 14  IEKNSK-GVSPYSGSYSNNAVLDCAYRRLADHARMISVCLADGAFP---ATSLNLKQIMR 181
           +EK S+     Y+GS  +    D  +R +ADH R  +V ++DGA P        ++++MR
Sbjct: 277 LEKTSELAKKQYTGSLDSRQ--DATFRLVADHIRAATVAISDGAVPDGTGCGFIVRKMMR 334

Query: 182 KSFKISTDVFKSPN-LLDHLYNEVASTLGSTYPELMTKEKEVKLIIEHERQAYSK 343
           ++F             +  L   VAST+   YPE+      ++ I   E   + K
Sbjct: 335 RAFLQGISKLGIERYAMSELVPVVASTMKEVYPEIHDTSTHIRKIFNDEEAQFWK 389


>L23648-9|AAK95877.1|  466|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 38
           protein.
          Length = 466

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +2

Query: 263 GSTYPELMTKEKEVKLIIEHERQAYSKMRAGFAKKWRELISRYPEVE 403
           G  Y ELM  + E+K  ++ ERQ   K RA   +++  +IS+ P VE
Sbjct: 356 GEDYIELMLDDSELKKPMDEERQ---KRRAELEQRFAIVISKTPPVE 399


>Z69904-5|CAA93778.1|  250|Caenorhabditis elegans Hypothetical
           protein ZK20.5 protein.
          Length = 250

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
 Frame = +2

Query: 116 ISVCLADGAFPATSLNLKQIMRKSFKISTDVFKSPNLLDHLYNEVASTLGSTYPELMTKE 295
           I   L +GA+    L  K I    + I   +     +LD +  E+A+++  ++  L  K+
Sbjct: 133 IEQSLMEGAYNKVVLTEKNIPSPFYTIFIRI-----MLDTIRREIATSIEKSFKVLTAKD 187

Query: 296 KEVKLIIEHERQAYSKMRAGFAKKWRELISRYP-EVEVMSD 415
             V L+ +++ Q     + G  +KW     RY  E+EV  +
Sbjct: 188 ATVMLLFDNDEQ---MKKFGQERKWHLDGERYVFEIEVAQE 225


>Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical protein
            B0024.6 protein.
          Length = 1161

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/53 (24%), Positives = 31/53 (58%)
 Frame = +2

Query: 146  PATSLNLKQIMRKSFKISTDVFKSPNLLDHLYNEVASTLGSTYPELMTKEKEV 304
            P+   ++KQ+  +   ++T+  ++ NL+DH++N + S   +   E+  + KE+
Sbjct: 863  PSERPDIKQVASQLRSMNTN--RNDNLMDHVFNVLESYASTLEDEVAERMKEL 913


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +2

Query: 254 STLGSTYPELMTKEKEVKLIIEHERQAYSKMRAGFAKKWRELISRYPEVEVMSDVEFGGF 433
           S+  S+ P   TK    KL ++HE++  S  +  F  +     +   EVE +++ EFG  
Sbjct: 444 SSSASSSPHSSTKSFLAKLGVKHEKEKDSISK--FLGRDVSNSNSVKEVEEINENEFGNS 501

Query: 434 TLGYKEFKET 463
           + G  + K T
Sbjct: 502 SFGESDGKTT 511


>U20862-5|AAK29861.1|  483|Caenorhabditis elegans Hypothetical
           protein W06E11.1 protein.
          Length = 483

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 53  SYSNNAVLDCAYR-RLADHARMISVCLADGAFPATSLNLKQIMRKSFKISTDVFKS 217
           ++SN A     YR  L  +AR +++CL DG    T L L    + S + S ++  +
Sbjct: 368 AHSNTAGKTDLYRAELWRNARDLALCLIDGGHRVTRLTLMTCFKLSERDSDEILST 423


>U58754-6|AAK72081.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 12 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -2

Query: 319 FNYQLHLLFLGHQLW--VSGAECRCYLVIQMIKKVRTL 212
           F Y L L FL H LW  +     RCY++ +      TL
Sbjct: 91  FGYSLMLHFLSHSLWSLLLSFSYRCYILYKPAPHRHTL 128


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 125 CLADGAFPATSLNLKQIMRKSFKISTDVFKSPNLLDHLYNEVASTLGS 268
           CL+   FP++  ++ + +R + K        PN ++ L   V ST+ S
Sbjct: 340 CLSGEPFPSSCYHISKQVRFARKQDEQTISLPNTVEELAFNVRSTIAS 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,515,333
Number of Sequences: 27780
Number of extensions: 225120
Number of successful extensions: 706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)