Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E03
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.33 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.1  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   3.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.4  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   5.4  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   5.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.5  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 185 SFKISTDVFKSPNLLDHLYNEVASTLGSTYPELMTKEKEVKLIIEHERQAYS 340
           +F IST ++++ N LD   +   S +GS  P   T        I  ER+ YS
Sbjct: 632 AFNISTTIYENQNCLDASSSRRGSKIGSPTPAEST-------FIPEERRIYS 676


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 179 RKSFKISTDVFKSPNLLDHLYNE 247
           R+ F +ST + +  NL  + Y+E
Sbjct: 282 RREFAVSTRILRDENLSQNSYHE 304


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = +3

Query: 432 SHWVIRNSKRQC 467
           +HW++R++ +QC
Sbjct: 797 NHWILRSNVQQC 808


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 293 EKEVKLIIEHERQAYSKMRAGFAK 364
           +K  K  I H+   YSK++  + K
Sbjct: 13  KKRTKKFIRHQSDRYSKLKRNWRK 36


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 409 HHLHFRIPRYQFSPF 365
           HHLH     YQ SP+
Sbjct: 74  HHLHHHQVLYQQSPY 88


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 169 TNNAQII*NINRCLQES*PS*SFV 240
           ++N   I N+ +C+QES P   FV
Sbjct: 120 SDNCNKIYNLAKCVQESAPDVWFV 143


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 169 TNNAQII*NINRCLQES*PS*SFV 240
           ++N   I N+ +C+QES P   FV
Sbjct: 120 SDNCNKIYNLAKCVQESAPDVWFV 143


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 320 VQLSTSPPFPWS 285
           ++LS S P PWS
Sbjct: 562 IELSRSNPTPWS 573


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,364
Number of Sequences: 438
Number of extensions: 2673
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)