Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E02
         (410 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6LFH0 Cluster: Putative uncharacterized protein; n=1; ...    32   5.2  
UniRef50_UPI00006CB741 Cluster: cation channel family protein; n...    31   9.1  
UniRef50_A0YJZ5 Cluster: Methyltransferase FkbM; n=1; Lyngbya sp...    31   9.1  

>UniRef50_Q6LFH0 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1257

 Score = 31.9 bits (69), Expect = 5.2
 Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = -1

Query: 269 VICKNIIHRNSL-DQLAY*ISTSNTE*TPQCKLDTFMDIYYYINNLHYKLHFF 114
           ++ +N +++NS+ ++  Y + TSN +     K D F +IY Y NN H++ ++F
Sbjct: 280 MVIENNVNKNSIYNKKKYDVCTSNHK-----KNDPFCNIYNYDNNHHHRYNYF 327


>UniRef50_UPI00006CB741 Cluster: cation channel family protein; n=1;
           Tetrahymena thermophila SB210|Rep: cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 1853

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 23/82 (28%), Positives = 42/82 (51%)
 Frame = -1

Query: 308 STNNVSVRTCVFFVICKNIIHRNSLDQLAY*ISTSNTE*TPQCKLDTFMDIYYYINNLHY 129
           ++NN     C F +I    +   S +Q+ Y +S  NT+ T + + D  + I  Y+NNL+ 
Sbjct: 696 ASNNYEATFCAFTMIFAGGVFAYSFNQIGYIVSEINTKNT-EFQKDINL-ISRYLNNLNI 753

Query: 128 KLHFFFQISLLTY*MQRDHEPQ 63
           K +   Q+ ++ Y M+  H  +
Sbjct: 754 KKN--LQLEVIKY-MEYKHRAE 772


>UniRef50_A0YJZ5 Cluster: Methyltransferase FkbM; n=1; Lyngbya sp.
           PCC 8106|Rep: Methyltransferase FkbM - Lyngbya sp. PCC
           8106
          Length = 247

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = -1

Query: 185 QCKLDTFMDIYYYINNLHYKLHFFFQI 105
           +C+L  F D+YYY+NN +++L  F+++
Sbjct: 201 ECQL--FEDLYYYLNNNNFRLSGFYEV 225


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 289,639,662
Number of Sequences: 1657284
Number of extensions: 4389832
Number of successful extensions: 6843
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6842
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18619342852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)