Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E02
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1043 + 23906340-23906412,23906525-23906631,23906727-239068...    27   7.7  

>08_02_1043 +
           23906340-23906412,23906525-23906631,23906727-23906846,
           23907174-23907353,23907508-23907666,23907751-23907920,
           23907971-23908165,23908536-23908888,23909047-23909223,
           23910402-23910466
          Length = 532

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 68  VRDLSAFNKLARRFEKKNVIYNVDYLYNSICP 163
           V DL  +N     FEK N   N+ ++YN+  P
Sbjct: 406 VVDLHYYNLFDPFFEKLNATENIQFIYNNRMP 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,206,186
Number of Sequences: 37544
Number of extensions: 104128
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)