Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E01
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    26   0.16 
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    25   0.29 
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    25   0.29 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.50 
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   4.7  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   6.2  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   8.1  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   8.1  

>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 26.2 bits (55), Expect = 0.16
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 438 VNVMGQLLLAHVTSRIVVGDVTCLHVLAFQNKSS 337
           ++ +G L++A   S  V+G V   H LA  NK++
Sbjct: 26  LSALGFLIIAGCVSPFVIGYVKHFHPLALSNKNA 59


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 129 PSWCWVSISRESGSNTIHL--PERLPTATTAPSVDHAAHCARSSC 1
           P++ W+ + R     T+    P   PT +++ +++     +RSSC
Sbjct: 195 PTYKWMQVKRNVPKPTVPKIPPAEFPTTSSSSALESPNPASRSSC 239


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 129 PSWCWVSISRESGSNTIHL--PERLPTATTAPSVDHAAHCARSSC 1
           P++ W+ + R     T+    P   PT +++ +++     +RSSC
Sbjct: 195 PTYKWMQVKRNVPKPTVPKIPPAEFPTTSSSSALESPDPASRSSC 239


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 127 RLGTDTDDTVFAGQQDGGRRVPGQLHIRVPRRRQRSPVHAPREMP 261
           ++ T TD   F   Q+   + PG+     PR R R+  H  R  P
Sbjct: 285 KICTTTDAAEFLAAQEIPGQNPGEKTNIAPRERPRATDHQRRNEP 329


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = -2

Query: 132 EPSWCW 115
           EP WCW
Sbjct: 579 EPEWCW 584


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 117 WVSISRESGSNTIHLPERLPTATTAPSV 34
           W+ +   +  NT + PE+  T T   +V
Sbjct: 113 WIFLETVANENTTNCPEQKNTVTVTFTV 140


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
          protein.
          Length = 142

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 72 PERLPTATTAPSVDHAAHCARSSC 1
          P   PT +++ +++     +RSSC
Sbjct: 5  PAEFPTTSSSSALESPNPASRSSC 28


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
          protein.
          Length = 142

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 72 PERLPTATTAPSVDHAAHCARSSC 1
          P   PT +++ +++     +RSSC
Sbjct: 5  PAEFPTTSSSSALESPNPASRSSC 28


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,885
Number of Sequences: 336
Number of extensions: 2875
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)