Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_E01
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.4  

>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 477 SVPSALSGHTPMLVNVMGQLLLAHV 403
           + P++ +  TP  +N+M Q+LLA +
Sbjct: 24  TTPASPTLSTPPTLNLMEQILLAKI 48


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +1

Query: 160 AGQQDGGRRVPGQLHIRVPRRRQRSPVHAPREMPGSLELHNT 285
           A +  G   VPG      P++  R  VH P+       L NT
Sbjct: 267 ARENPGPPGVPGDHGDHAPKQTVRFKVHDPKAHSKGGTLENT 308


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 103  RDAHPAPGRLGTDTDDTVFAGQQDGGRRVPGQLHI 207
            RDA   PG     T+ TV +G  +  RR P   HI
Sbjct: 1301 RDAVTVPGNNLIATNTTVSSGSSEDHRR-PLSEHI 1334


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 88  EHHPLAGEAAHRHHG 44
           ++HP  G + H  HG
Sbjct: 325 QYHPHRGSSPHHQHG 339


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 82  HPLAGEAAHRHHGAVSGP 29
           HP   + A +H G V+ P
Sbjct: 222 HPRQQQQAQQHQGVVTSP 239


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 105  SRESGSNTIHLPERLPTATTAPS 37
            S   G      PER+PT   +PS
Sbjct: 1358 SASGGRPVPERPERVPTVDLSPS 1380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,401
Number of Sequences: 438
Number of extensions: 3454
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)