Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D24
         (115 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    23   7.0  
SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    22   9.3  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    22   9.3  

>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 7   MNLPRCSLESYNFSHYH 57
           + LP+C L S N  HY+
Sbjct: 101 LTLPKCVLRSKNGLHYY 117


>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
          Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 35 VIILAIIMISRWRRKQFQS 91
          V +   ++I+RWRRK  +S
Sbjct: 10 VTLFLYLLITRWRRKNEKS 28


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 31  ESYNFSHYHDIKMAAQTVPKLLSNLD 108
           + Y F  YHD   AA  V + L+N D
Sbjct: 46  KGYGFCEYHDPATAASAV-RNLNNYD 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,860
Number of Sequences: 5004
Number of extensions: 4193
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 19
effective length of database: 2,267,402
effective search space used: 40813236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)