Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D22
(440 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 0.97
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.0
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 25 3.9
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 3.9
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 25 3.9
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 5.2
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ... 25 5.2
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 25 5.2
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 25 6.8
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 24 9.0
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 27.5 bits (58), Expect = 0.97
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -3
Query: 300 LKQASHTPTILWRSSSIPFGDFSSDISAPRPLKYFRSSN 184
+K+A H +L SSS+P +F+ +S+P LKY +S+
Sbjct: 571 VKKAEHLEPLLNVSSSVPSKNFT--VSSPDHLKYGNTSS 607
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 3.0
Identities = 23/89 (25%), Positives = 41/89 (46%)
Frame = -3
Query: 417 LVSLSLNARIRFSPLSKGIDTIIETMLFRIASISDSFASLKQASHTPTILWRSSSIPFGD 238
LVS S + + SP++ + I + +++ S S +++ +S + T + SS+IP
Sbjct: 677 LVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSV 736
Query: 237 FSSDISAPRPLKYFRSSNA*SSRDISIKT 151
SS + SS SS +S T
Sbjct: 737 NSSTLITASSSNTLLSSITSSSAIVSSTT 765
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 3.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 267 WRSSSIPFGDFSSDISAPR 211
WR + FG F++D+SA R
Sbjct: 316 WRREASKFGGFAADVSAER 334
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 3.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 158 MDISLEDQALELRKYFKGLGAEISEEKSP 244
+D +D+ ++ K+F+ G +SEE SP
Sbjct: 276 VDEERQDRVSKISKHFQDSGTPVSEEVSP 304
>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 3.9
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = +2
Query: 164 ISLEDQALELRKYFKGLGAEISEEKSPKGI--EDDLHKIVGVCDACFKEANESDIEAIL 334
I+L D K G ++ G+ + DLH I+G C E SD+ A L
Sbjct: 230 ITLSDGTKRPCKIMLLAGGDLIASMGEPGVWSDKDLHHILGKFGCCIVERTGSDVWAFL 288
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 310 VCFFKAGIAYSYNFMEIILYTFWRFFFRYLCTKAFKI 200
+CF + I ++ +M ++ WRFF+ TK +KI
Sbjct: 1158 ICFLISVINQNF-WMSTLISQAWRFFWGSKLTKLWKI 1193
>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +2
Query: 188 ELRKYFKGLG-AEISEEKSPKG-----IEDDLHKIVGVCDACFKEANESDIEAILNS 340
EL +Y L +IS +K+P+ +E+DL +++ + + +E+ E+D NS
Sbjct: 4 ELEEYKSQLALVQISLQKTPQNEELQLLENDLKELISLTENLLQESVENDKNTFQNS 60
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 357 CQFL*KEGKTLFWHS 401
C F EGK +FWHS
Sbjct: 108 CDFNDPEGKRVFWHS 122
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 224 ISEEKSPKGIEDDLHKIVGVCDACFKEANESDIEAILN 337
IS ++ K +DD K+ + KE NE++ EA+ +
Sbjct: 381 ISVDEPQKDSKDDSEKVEKETEVERKEENEAEAEAVFD 418
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 24.2 bits (50), Expect = 9.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 375 LSKGIDTIIETMLFRIASISDSFASLKQASHTPTIL 268
L KG++ +IET + + + +L++ SH TIL
Sbjct: 137 LKKGLECVIETPPRLLMNKDEISLNLQRLSHMETIL 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,032
Number of Sequences: 5004
Number of extensions: 35289
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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