Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D22
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0543 + 23766089-23766328,23766976-23767212,23767601-23767876     28   3.8  
06_03_0051 - 16023915-16023944,16024025-16024680,16024808-16025300     27   5.1  
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    27   8.8  

>02_04_0543 + 23766089-23766328,23766976-23767212,23767601-23767876
          Length = 250

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 23/81 (28%), Positives = 37/81 (45%)
 Frame = +2

Query: 146 PAVFMDISLEDQALELRKYFKGLGAEISEEKSPKGIEDDLHKIVGVCDACFKEANESDIE 325
           P    D+ L++Q  +LR+   G G      +   G         G  D  FKE+ +  ++
Sbjct: 96  PRPIQDL-LKEQIAKLREQGSGGGGGNRNRRGGSGDSG------GPEDESFKESLDELVQ 148

Query: 326 AILNSIVSIMVSIPLERGENL 388
            IL ++  I+V I + RGE L
Sbjct: 149 VILATVAFILVYIHIIRGEEL 169


>06_03_0051 - 16023915-16023944,16024025-16024680,16024808-16025300
          Length = 392

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +2

Query: 191 LRKYFKGLGAEISEEKSPKGIEDDLHKIVGVCDACFKEANESDIEAILNSIVSIMVSIPL 370
           LRK F+ + A      +  G   D  K   V D CF    ESD E   N + +   +I +
Sbjct: 281 LRKAFQKVCAPFEPLSNVDGESGDDDKGKNVSDVCFMARGESDTEYEDNEVSAFEEAITI 340

Query: 371 ERGEN 385
              +N
Sbjct: 341 LSAKN 345


>07_03_1479 -
           26832976-26833095,26833737-26833943,26834104-26834252,
           26834330-26834732,26834840-26835118,26835285-26835716,
           26836362-26836838,26837171-26837212,26837285-26837545,
           26837637-26838938,26839146-26839575,26839643-26840046,
           26840360-26840716,26840842-26841102,26841494-26842141,
           26842231-26842452,26842547-26842768,26842860-26843009,
           26843739-26844111,26844467-26844689,26845167-26845425,
           26845585-26845920,26846013-26846999,26848395-26849624,
           26849706-26849768,26849858-26849910,26849998-26850079,
           26850520-26850588,26851070-26851129,26851205-26851267,
           26851993-26852101,26852742-26852827,26853120-26853847,
           26854613-26854676
          Length = 3716

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 191 LRKYFKGLGAEISEEKSPKGIEDDLHKIVGVCDACFKEANESDI-EAILNSIVSIMVSIP 367
           LR YF+   A +S   +P+G E+  HK+  V          S++    +  ++ + + + 
Sbjct: 49  LRCYFRAFSAILSNFTAPQGTENAEHKLRNVVIEILNRLPHSEVLRPFVQDLLKLSLRVL 108

Query: 368 LERGE-NLILA 397
            +  E N +LA
Sbjct: 109 TQDNEDNALLA 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,793,312
Number of Sequences: 37544
Number of extensions: 192893
Number of successful extensions: 406
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)