Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D22
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical ...    30   0.65 
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation...    29   1.1  
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini...    29   1.1  
Z82278-3|CAB05255.1|  347|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    28   2.6  
U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z68217-8|CAI59117.1|  156|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z95559-5|CAB63362.2|  326|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    27   4.6  
AF025469-1|AAG00030.3|  578|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z68217-9|CAN86607.1|  142|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical
           protein F56A11.4 protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 313 FVCFFKAGIAYSYNFMEIILYTFWRFFFRYLCT 215
           F+  F A + + Y  +E+ LYT W F+ +Y+ T
Sbjct: 122 FMLIFPASLVWDYFRVEL-LYTCWHFYIKYVST 153


>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
           germline protein5 protein.
          Length = 1200

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +2

Query: 122 LKNFTMQGPAVFMDISL-EDQALELRKYFKGLGAEISEEKSPKGIEDDLHKIVGVCDACF 298
           L+N+  +     ++I L ED+   LR Y KG GAEI   K  K  +  L +   +  A  
Sbjct: 397 LRNYDDESDGEDIEIELVEDEPDFLRGYGKG-GAEIEPVKVVKNPDGSLAQAALMQGALS 455

Query: 299 KEANESDIEA 328
           KE  E+ I+A
Sbjct: 456 KERKETKIQA 465


>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
           protein MOG-5 protein.
          Length = 1200

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +2

Query: 122 LKNFTMQGPAVFMDISL-EDQALELRKYFKGLGAEISEEKSPKGIEDDLHKIVGVCDACF 298
           L+N+  +     ++I L ED+   LR Y KG GAEI   K  K  +  L +   +  A  
Sbjct: 397 LRNYDDESDGEDIEIELVEDEPDFLRGYGKG-GAEIEPVKVVKNPDGSLAQAALMQGALS 455

Query: 299 KEANESDIEA 328
           KE  E+ I+A
Sbjct: 456 KERKETKIQA 465


>Z82278-3|CAB05255.1|  347|Caenorhabditis elegans Hypothetical
           protein M162.3 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 310 VCFFKAGIAYSYNFMEIILYTFWRFFFRYLC 218
           +CFF  G A  YN + I+    W   F  +C
Sbjct: 247 ICFFNTGTALVYNALAIVTPAEWILAFGQIC 277


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +2

Query: 164  ISLEDQALELRKYFKGLGAEISEEKSPKGIEDDLHKIVGVCDACFKEANESDIEAIL--N 337
            +SLEDQ LEL +  + +  E+ +EK+ K   D   K+    +  + +  E D EA    N
Sbjct: 1256 LSLEDQNLELEERLQEMEEELLDEKNKKKEVD--AKVEQKSEENWGDWGEDDAEAATESN 1313

Query: 338  SIVSIMVSIPLERGENL 388
             +VS + S   E  + L
Sbjct: 1314 VVVSTLQSTVAELQDRL 1330


>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
            transmembrane conductanceregulator homolog protein 1
            protein.
          Length = 1247

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 161  DISLEDQALELRKYFKGLGAEISEEKSPKGIEDDLHKIVGVCDACFK 301
            DI L  +A +LR+Y K L   + +  SP+ + ++    V VC A  K
Sbjct: 1117 DIWLAIEACQLREYVKSLPDGLHQMVSPEKMSNEQKCQVNVCRALLK 1163


>U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical
           protein F01G12.1 protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -2

Query: 358 HHYRNNAV*NSFNIRFVCFFKAGIAYSYNFMEIILYTFWR 239
           HH  NN      N+R        + + + F E++L+ FWR
Sbjct: 97  HHIHNNEEHKHHNMRSHDHHTMKMWFHWGFDEVVLFDFWR 136


>AC006712-2|AAK39324.1|  754|Caenorhabditis elegans Hypothetical
           protein Y119C1B.5 protein.
          Length = 754

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 273 ILWRSSSIPFGDFSSDISAPRPLKYF 196
           +LWR     F D S D+    PL YF
Sbjct: 66  LLWRYQGFSFEDISDDMMKQTPLSYF 91


>Z68217-8|CAI59117.1|  156|Caenorhabditis elegans Hypothetical
           protein F58G6.9a protein.
          Length = 156

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -2

Query: 292 GIAYSYNFME--II--LYTFWRFFFRYLCTKAFKIFS*F*CL 179
           G +  YNF +  II  LY FW+    Y+    + +FS + CL
Sbjct: 94  GKSEKYNFWKRHIIDSLYHFWQLLLAYILMNVYMVFSVYICL 135


>Z95559-5|CAB63362.2|  326|Caenorhabditis elegans Hypothetical
           protein Y41E3.12 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = -2

Query: 325 FNIRFVCFFKAGIAYSYNFMEIILYTFWRFFFRYLC 218
           F    +CFF    A  YN +  I   FW      LC
Sbjct: 242 FQCAIICFFNTVSAMVYNAVAFITPDFWILLLGQLC 277


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 182  ALELRKYFKGLGAEISEEKSPKGIEDDLHKI 274
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 182  ALELRKYFKGLGAEISEEKSPKGIEDDLHKI 274
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 182  ALELRKYFKGLGAEISEEKSPKGIEDDLHKI 274
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>AF025469-1|AAG00030.3|  578|Caenorhabditis elegans Hypothetical
           protein W09B6.3 protein.
          Length = 578

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 281 VCDACFKEANESDIEAILNS--IVSIMVSIPLERGENLILAFSERLTKAP 424
           + D CF E  E + ++I+NS  I  +   I +E+ +     F E L K P
Sbjct: 370 ILDRCFSELPEREAKSIINSYFIDRLAEGIKIEKIDKNWRTFGEILPKTP 419


>Z68217-9|CAN86607.1|  142|Caenorhabditis elegans Hypothetical
           protein F58G6.9b protein.
          Length = 142

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 256 LYTFWRFFFRYLCTKAFKIFS*F*CL 179
           LY FW+    Y+    + +FS + CL
Sbjct: 96  LYHFWQLLLAYILMNVYMVFSVYICL 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,843,194
Number of Sequences: 27780
Number of extensions: 192577
Number of successful extensions: 477
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)