Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D22
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.85 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   3.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 137 MQGPAVFMDISLEDQALELRKYFKGLGAEISEEKSP 244
           +Q P ++   SL D+A +  K F+ L  + S E  P
Sbjct: 625 LQAPPLYDTNSLMDEAYKPHKKFRALRQKDSAEAEP 660


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = -3

Query: 408 LSLNARIRFSPLSKGIDTIIETMLFRIASISDSFASLKQASHTPTI-LWRSSSIPF-GDF 235
           LSL   +RFS L       + T+L R       +  L+ A+  P I    +++ PF G  
Sbjct: 719 LSLEDLVRFSTLEGSGGDSLRTLLQRGQETGAEWPGLEHANIGPYIQKMIAAAAPFKGME 778

Query: 234 SSDISAPRPLKYFRSSNA*SSRDIS 160
           + D   P  ++   S +   S+ ++
Sbjct: 779 TQDYRIPEVMRRLMSEDKRLSKSVN 803


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 11  RVARIIVHMYFGYLRIC 61
           +VARI+    FG L IC
Sbjct: 470 KVARIVFPASFGLLNIC 486


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +3

Query: 198 NILKALVQRYLKKN-LQKV 251
           NILK L Q+Y+K + L+KV
Sbjct: 342 NILKFLKQKYVKNSKLEKV 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,285
Number of Sequences: 438
Number of extensions: 2517
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)