Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_D21
(517 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 163 1e-41
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 49 4e-07
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 26 3.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 5.1
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 6.7
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 6.7
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 6.7
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 6.7
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 8.9
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 163 bits (396), Expect = 1e-41
Identities = 76/138 (55%), Positives = 100/138 (72%)
Frame = +3
Query: 102 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 281
K+ YF K+ L ++Y F+V DNV SQQM +R LRG + ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 282 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 461
P LE+LLP ++GNVGFVFT DL +VR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 462 LGPEKTSFFQALSIPTKI 515
+ P KTSFFQAL IPTKI
Sbjct: 128 MEPGKTSFFQALGIPTKI 145
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 49.2 bits (112), Expect = 4e-07
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Frame = +3
Query: 72 KMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNT 251
K G E KA F + Q LD + +I N+ + +++IR +G S + MGK
Sbjct: 17 KKGHEGKAA----LFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKG-SRIFMGKTK 71
Query: 252 MMRKAIKDHLETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAI 422
+M KA+ E A + KL + G VG +FT +V E+ VQ AR GA+
Sbjct: 72 VMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAV 130
Query: 423 APLSVVIPA 449
AP + VIPA
Sbjct: 131 APFTHVIPA 139
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 3.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 54 PYFTQSKMGREDKATWKSNY 113
PYF Q+ M D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 13 GLCVFVLSLNFSEVPTSLNPRWVGRTRLPGS 105
GLC + L+ + ++NP ++GR +LP +
Sbjct: 1971 GLCQSPILLDAPTIFVTMNPGYLGRFKLPSN 2001
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 472 SGPRPVL*AGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 344
+G PV + + G++ P AGAW L N L T ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 228 IVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 362
I L+G N ++ DH++ +P ++ P+I V ++GDLV
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLV 443
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 222 HSIVLMGKNTMMRKAIKDHLE 284
HS++ KNT KA+ HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 248 HHDEESHQGPS*NKSSSRKTASSHQG 325
HH+ + S S+SRK A SH G
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTG 456
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 24.6 bits (51), Expect = 8.9
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -3
Query: 485 ERSLLRTKASVMSGNDDRQWSNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 318
++ +L K + D+R + R LD LQ +I +IST + N +L+
Sbjct: 271 KQEVLILKEKIKKIEDERMRQMSVSSDRTLDSQLQTVNENITRISTSIELKNTALE 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,559
Number of Sequences: 5004
Number of extensions: 50217
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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