Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D20
         (224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   1.8  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    24   3.1  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   3.1  
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    23   5.4  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    23   7.2  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    22   9.5  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    22   9.5  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    22   9.5  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 104
           R+K   +++  E +  ++L +RK+  K+ ++EE
Sbjct: 684 REKMAREQRLREEEEKRILEERKRREKLDKEEE 716



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 24  KRKSAEADYAKLLAQRKKESKVRRQEEIK 110
           + K A+   AKLL + ++E+K +++ E+K
Sbjct: 561 REKVAQQRQAKLLEEIEEENKRKQERELK 589


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 3   TRKKRLAKRKSAEADYAKLL 62
           T+KKR AKR SA A  A L+
Sbjct: 580 TKKKRKAKRNSALAGLAALV 599


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 64  HRERRNPRSAVKKRSNAGVRLQC 132
           H  +R+P  A++     GVRL C
Sbjct: 314 HEHQRDPAYAIRTALTRGVRLLC 336


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQE 101
           +KK+ +K K A+ + +K   + KK+ K ++ +
Sbjct: 454 KKKKSSKLKEADGESSKKEKKEKKDKKHKKSK 485


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 18  LAKRKSAEADYAKLLAQRKKESKVRRQEE 104
           L K+  AE    KLLA  +  SKV + E+
Sbjct: 6   LLKKSIAEKKDVKLLASSEATSKVEKIED 34


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 64  HRERRNPRSAVKKRSNAGVRL 126
           H  +RNPRSA+ +     V L
Sbjct: 305 HERQRNPRSAIYQACTDSVSL 325


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 47  LR*TTSTEKEGIQG--PPSRRDQTQAFGFN 130
           +R  +S  K+ I+   PP  R++ Q+FGF+
Sbjct: 502 IREFSSERKKKIEDFEPPCSREKLQSFGFD 531


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKV 89
           R+K  AK ++     AK  ++ K+ESKV
Sbjct: 39  RRKEKAKARAEAKKLAKKESKAKQESKV 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 526,182
Number of Sequences: 5004
Number of extensions: 6269
Number of successful extensions: 30
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)