Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D20
         (224 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...    45   1e-05
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...    43   3e-05
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    26   3.6  
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508...    25   6.2  
01_06_0847 + 32411521-32411619,32411737-32411851,32412292-324123...    25   6.2  
12_02_0521 - 19955475-19956076,19957146-19958403                       25   8.2  
06_01_0888 + 6805071-6805485,6806202-6806374,6806501-6806549,680...    25   8.2  
05_07_0021 - 27100249-27101838,27102434-27102547                       25   8.2  

>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 20/34 (58%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +KKR+AK+KS  A+Y KLLAQR KE + RR E +
Sbjct: 199 KKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232


>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K+R+AK+KS  A+Y KLLAQR KE + RR E +
Sbjct: 199 KKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K++ +K+++A+AD +     R+K  KVR   EI
Sbjct: 344 KKQQHSKKRTAQADVSDAKLCRRKPKKVRLLSEI 377


>03_02_0025 +
           5084003-5084303,5084449-5084639,5084793-5084873,
           5084972-5085319,5085409-5086293
          Length = 601

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 104
           RK+R  + K       +   QR+KE K RR+EE
Sbjct: 505 RKRREEEEKERREREEEERRQREKEEKKRREEE 537


>01_06_0847 +
           32411521-32411619,32411737-32411851,32412292-32412375,
           32412430-32413478,32414690-32416371,32416477-32416586,
           32417634-32418430,32418839-32418951,32419147-32419194,
           32419425-32419652,32419732-32419829,32419967-32420019
          Length = 1491

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 3   TRKKRLAKRKS-AEADYAKLLAQRKKESKVRRQEEIK 110
           T +K+L + KS AE  +AKL  Q+K    +R + E++
Sbjct: 283 TERKKLTEEKSRAECLFAKLEEQKKLNEDLRVRIEVE 319


>12_02_0521 - 19955475-19956076,19957146-19958403
          Length = 619

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 18  LAKRKSAEADYAKL-LAQRKKESKVRRQ 98
           LAK + AE DYA L L +R +E++  +Q
Sbjct: 540 LAKSERAEQDYASLYLKRRLEEAEAEKQ 567


>06_01_0888 +
           6805071-6805485,6806202-6806374,6806501-6806549,
           6806654-6806820,6806919-6807002,6807097-6807135
          Length = 308

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEE 104
           RK R AKRK+ EA+     A+RK ++    + E
Sbjct: 87  RKAREAKRKAEEAERKAAEAERKAKAPAEPKPE 119


>05_07_0021 - 27100249-27101838,27102434-27102547
          Length = 567

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 67  RERRNPRSAVKKRSNAGVRLQCVTLRA 147
           R+ R+P S+VK+R    + L C+ L A
Sbjct: 534 RKPRSPSSSVKRRKRRVLTLNCLKLLA 560


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,572,868
Number of Sequences: 37544
Number of extensions: 43418
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)