Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_D20
         (224 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67309-1|CAA47719.1|  249|Homo sapiens ribosomal protein S6 prot...    42   3e-04
M77232-1|AAA60289.1|  249|Homo sapiens ribosomal protein S6 prot...    42   3e-04
BC094826-1|AAH94826.1|  249|Homo sapiens ribosomal protein S6 pr...    42   3e-04
BC071908-1|AAH71908.1|  249|Homo sapiens ribosomal protein S6 pr...    42   3e-04
BC071907-1|AAH71907.1|  249|Homo sapiens ribosomal protein S6 pr...    42   3e-04
BC013296-1|AAH13296.1|  249|Homo sapiens ribosomal protein S6 pr...    42   3e-04
BC009427-1|AAH09427.2|  247|Homo sapiens RPS6 protein protein.         42   3e-04
BC000524-1|AAH00524.1|  249|Homo sapiens ribosomal protein S6 pr...    42   3e-04
AL391834-6|CAM21143.1|  249|Homo sapiens ribosomal protein S6 pr...    42   3e-04
AL391834-5|CAM21142.1|  218|Homo sapiens ribosomal protein S6 pr...    42   3e-04
AB062123-1|BAB93455.1|  249|Homo sapiens ribosomal protein S6 pr...    42   3e-04
J03537-1|AAA60287.1|  249|Homo sapiens RPS6 protein.                   41   6e-04
BC027620-1|AAH27620.1|  249|Homo sapiens ribosomal protein S6 pr...    41   6e-04
M20020-1|AAA60288.1|  249|Homo sapiens RPS6 protein.                   41   8e-04

>X67309-1|CAA47719.1|  249|Homo sapiens ribosomal protein S6
           protein.
          Length = 249

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K+R  K K   A+YAKLLA+R KE+K +RQE+I
Sbjct: 195 KKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228


>M77232-1|AAA60289.1|  249|Homo sapiens ribosomal protein S6
           protein.
          Length = 249

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K+R  K K   A+YAKLLA+R KE+K +RQE+I
Sbjct: 195 KKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228


>BC094826-1|AAH94826.1|  249|Homo sapiens ribosomal protein S6
           protein.
          Length = 249

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K+R  K K   A+YAKLLA+R KE+K +RQE+I
Sbjct: 195 KKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228


>BC071908-1|AAH71908.1|  249|Homo sapiens ribosomal protein S6
           protein.
          Length = 249

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K+R  K K   A+YAKLLA+R KE+K +RQE+I
Sbjct: 195 KKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228


>BC071907-1|AAH71907.1|  249|Homo sapiens ribosomal protein S6
           protein.
          Length = 249

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K+R  K K   A+YAKLLA+R KE+K +RQE+I
Sbjct: 195 KKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228


>BC013296-1|AAH13296.1|  249|Homo sapiens ribosomal protein S6
           protein.
          Length = 249

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K+R  K K   A+YAKLLA+R KE+K +RQE+I
Sbjct: 195 KKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228


>BC009427-1|AAH09427.2|  247|Homo sapiens RPS6 protein protein.
          Length = 247

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K+R  K K   A+YAKLLA+R KE+K +RQE+I
Sbjct: 193 KKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 226


>BC000524-1|AAH00524.1|  249|Homo sapiens ribosomal protein S6
           protein.
          Length = 249

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K+R  K K   A+YAKLLA+R KE+K +RQE+I
Sbjct: 195 KKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228


>AL391834-6|CAM21143.1|  249|Homo sapiens ribosomal protein S6
           protein.
          Length = 249

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K+R  K K   A+YAKLLA+R KE+K +RQE+I
Sbjct: 195 KKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228


>AL391834-5|CAM21142.1|  218|Homo sapiens ribosomal protein S6
           protein.
          Length = 218

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K+R  K K   A+YAKLLA+R KE+K +RQE+I
Sbjct: 164 KKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 197


>AB062123-1|BAB93455.1|  249|Homo sapiens ribosomal protein S6
           protein.
          Length = 249

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K+R  K K   A+YAKLLA+R KE+K +RQE+I
Sbjct: 195 KKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228


>J03537-1|AAA60287.1|  249|Homo sapiens RPS6 protein.
          Length = 249

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K+R  K K   A+YAKLLA+R K++K +RQE+I
Sbjct: 195 KKQRTKKNKEEAAEYAKLLAKRMKQAKEKRQEQI 228


>BC027620-1|AAH27620.1|  249|Homo sapiens ribosomal protein S6
           protein.
          Length = 249

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +K+R  K K   A+YAKLLA+R KE++ +RQE+I
Sbjct: 195 KKQRTKKNKEEAAEYAKLLAKRMKEAREKRQEQI 228


>M20020-1|AAA60288.1|  249|Homo sapiens RPS6 protein.
          Length = 249

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +3

Query: 6   RKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEI 107
           +++R  K K   A+YAKLLA+R KE+K +RQE+I
Sbjct: 195 KQQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,046,964
Number of Sequences: 237096
Number of extensions: 224597
Number of successful extensions: 791
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 76,859,062
effective HSP length: 53
effective length of database: 64,292,974
effective search space used: 1350152454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)